Index | BIIGLE Server Documentation

A

Annotation — Class in namespace Biigle: An image annotation is a region of an image that can be labeled by the users.
AnnotationLabel — Class in namespace Biigle
AnnotationLabel::annotation() — Method in class AnnotationLabel: The annotation, this annotation label belongs to.
AnnotationSession — Class in namespace Biigle: An annotation session groups multiple annotations of a volume based on their creation date.
$ AnnotationSession#appends — Property in class AnnotationSession: The accessors to append to the model's array form.
AnnotationSession::annotations() — Method in class AnnotationSession: Get a query for all annotations that belong to this session.
AnnotationSession::allowsAccess() — Method in class AnnotationSession: Check if the given user is allowed to access the annotation if this annotation session is active.
ApiToken — Class in namespace Biigle
Apidoc — Class in namespace Biigle\Console\Commands
Annotation — Class in namespace Biigle\Contracts: An annotation model.
AnnotationSessionController — Class in namespace Biigle\Http\Controllers\Api
AnnotationController — Class in namespace Biigle\Http\Controllers\Api\Annotations\Filters
AnnotationUserController — Class in namespace Biigle\Http\Controllers\Api\Annotations\Filters
ApiTokenController — Class in namespace Biigle\Http\Controllers\Api
ProjectLabelTreeController::available() — Method in class ProjectLabelTreeController: Display all label trees that can be used by the specified project.
ProjectUserController::attach() — Method in class ProjectUserController: Adds a new user to the specified project.
ProjectVolumeController::attach() — Method in class ProjectVolumeController: Attaches the existing specified volume to the existing specified project.
UserRegistrationController::accept() — Method in class UserRegistrationController: Approves a user sign up.
AnnotationLabelController — Class in namespace Biigle\Http\Controllers\Api\Volumes\Filters
AnyFileLabelController — Class in namespace Biigle\Http\Controllers\Api\Volumes\Filters
LoginController::attemptLogin() — Method in class LoginController: Attempt to log the user into the application.
AnnotationToolController — Class in namespace Biigle\Http\Controllers\Views\Annotations
DashboardController::annotationsActivityItems() — Method in class DashboardController: Get the most recently annotated images of a user.
SettingsController::account() — Method in class SettingsController: Shows the account settings.
Authenticate — Class in namespace Biigle\Http\Middleware
$ VerifyCsrfToken#addHttpCookie — Property in class VerifyCsrfToken: Indicates whether the XSRF-TOKEN cookie should be set on the response.
AttachProjectUser — Class in namespace Biigle\Http\Requests
AttachProjectUser::authorize() — Method in class AttachProjectUser: Determine if the user is authorized to make this request.
DestroyAnnotationSession::authorize() — Method in class DestroyAnnotationSession: Determine if the user is authorized to make this request.
DestroyLabel::authorize() — Method in class DestroyLabel: Determine if the user is authorized to make this request.
DestroyLabelTree::authorize() — Method in class DestroyLabelTree: Determine if the user is authorized to make this request.
DestroyLabelTreeUser::authorize() — Method in class DestroyLabelTreeUser: Determine if the user is authorized to make this request.
DestroyLabelTreeVersion::authorize() — Method in class DestroyLabelTreeVersion: Determine if the user is authorized to make this request.
DestroyOwnUser::authorize() — Method in class DestroyOwnUser: Determine if the user is authorized to make this request.
DestroyPinnedProject::authorize() — Method in class DestroyPinnedProject: Determine if the user is authorized to make this request.
DestroyProjectUser::authorize() — Method in class DestroyProjectUser: Determine if the user is authorized to make this request.
DestroyUser::authorize() — Method in class DestroyUser: Determine if the user is authorized to make this request.
$ DestroyVideoAnnotationLabel#annotationLabel — Property in class DestroyVideoAnnotationLabel: The annotation label that should be deleted
DestroyVideoAnnotationLabel::authorize() — Method in class DestroyVideoAnnotationLabel: Determine if the user is authorized to make this request.
DestroyVolumeFile::authorize() — Method in class DestroyVolumeFile: Determine if the user is authorized to make this request.
LinkVideoAnnotation::authorize() — Method in class LinkVideoAnnotation: Determine if the user is authorized to make this request.
$ SplitVideoAnnotation#annotation — Property in class SplitVideoAnnotation: The annotation that should be split.
SplitVideoAnnotation::authorize() — Method in class SplitVideoAnnotation: Determine if the user is authorized to make this request.
StoreAnnotationSession::authorize() — Method in class StoreAnnotationSession: Determine if the user is authorized to make this request.
StoreFederatedSearchInstance::authorize() — Method in class StoreFederatedSearchInstance: Determine if the user is authorized to make this request.
StoreImageAnnotation::authorize() — Method in class StoreImageAnnotation: Determine if the user is authorized to make this request.
$ StoreImageAnnotationLabel#annotation — Property in class StoreImageAnnotationLabel: The annotation to which the label should be attached.
StoreImageAnnotationLabel::authorize() — Method in class StoreImageAnnotationLabel: Determine if the user is authorized to make this request.
StoreImageAnnotations::authorize() — Method in class StoreImageAnnotations: Determine if the user is authorized to make this request.
StoreLabel::authorize() — Method in class StoreLabel: Determine if the user is authorized to make this request.
StoreLabelTree::authorize() — Method in class StoreLabelTree: Determine if the user is authorized to make this request.
StoreLabelTreeAuthorizedProject::authorize() — Method in class StoreLabelTreeAuthorizedProject: Determine if the user is authorized to make this request.
StoreLabelTreeMerge::authorize() — Method in class StoreLabelTreeMerge: Determine if the user is authorized to make this request.
StoreLabelTreeUser::authorize() — Method in class StoreLabelTreeUser: Determine if the user is authorized to make this request.
StoreLabelTreeVersion::authorize() — Method in class StoreLabelTreeVersion: Determine if the user is authorized to make this request.
StoreParseIfdo::authorize() — Method in class StoreParseIfdo: Determine if the user is authorized to make this request.
StorePinnedProject::authorize() — Method in class StorePinnedProject: Determine if the user is authorized to make this request.
StoreProject::authorize() — Method in class StoreProject: Determine if the user is authorized to make this request.
StoreProjectLabelTree::authorize() — Method in class StoreProjectLabelTree: Determine if the user is authorized to make this request.
StoreSystemMessage::authorize() — Method in class StoreSystemMessage: Determine if the user is authorized to make this request.
StoreUser::authorize() — Method in class StoreUser: Determine if the user is authorized to make this request.
StoreVideoAnnotation::authorize() — Method in class StoreVideoAnnotation: Determine if the user is authorized to make this request.
StoreVideoAnnotation::annotationContained() — Method in class StoreVideoAnnotation: Check if the point or circle annotation is fully contained by the video.
$ StoreVideoAnnotationLabel#annotation — Property in class StoreVideoAnnotationLabel: The annotation to which the label should be attached.
StoreVideoAnnotationLabel::authorize() — Method in class StoreVideoAnnotationLabel: Determine if the user is authorized to make this request.
StoreVolume::authorize() — Method in class StoreVolume: Determine if the user is authorized to make this request.
StoreVolumeFile::authorize() — Method in class StoreVolumeFile: Determine if the user is authorized to make this request.
StoreVolumeFileLabel::authorize() — Method in class StoreVolumeFileLabel: Determine if the user is authorized to make this request.
StoreVolumeMetadata::authorize() — Method in class StoreVolumeMetadata: Determine if the user is authorized to make this request.
UpdateAnnotationSession::authorize() — Method in class UpdateAnnotationSession: Determine if the user is authorized to make this request.
UpdateFederatedSearchInstance::authorize() — Method in class UpdateFederatedSearchInstance: Determine if the user is authorized to make this request.
UpdateLabel::authorize() — Method in class UpdateLabel: Determine if the user is authorized to make this request.
UpdateLabelTree::authorize() — Method in class UpdateLabelTree: Determine if the user is authorized to make this request.
UpdateLabelTreeUser::authorize() — Method in class UpdateLabelTreeUser: Determine if the user is authorized to make this request.
UpdateLabelTreeVersion::authorize() — Method in class UpdateLabelTreeVersion: Determine if the user is authorized to make this request.
UpdateOwnUser::authorize() — Method in class UpdateOwnUser: Determine if the user is authorized to make this request.
UpdateProject::authorize() — Method in class UpdateProject: Determine if the user is authorized to make this request.
UpdateProjectUser::authorize() — Method in class UpdateProjectUser: Determine if the user is authorized to make this request.
UpdateSystemMessage::authorize() — Method in class UpdateSystemMessage: Determine if the user is authorized to make this request.
UpdateUser::authorize() — Method in class UpdateUser: Determine if the user is authorized to make this request.
$ UpdateUserSettings#additionalRules — Property in class UpdateUserSettings: Additional validation rules that can be added during runtime.
UpdateUserSettings::addRule() — Method in class UpdateUserSettings: Add a new settings validation rule.
UpdateUserSettings::authorize() — Method in class UpdateUserSettings: Determine if the user is authorized to make this request.
$ UpdateVideoAnnotation#annotation — Property in class UpdateVideoAnnotation: The annotation that should be updated
UpdateVideoAnnotation::authorize() — Method in class UpdateVideoAnnotation: Determine if the user is authorized to make this request.
UpdateVolume::authorize() — Method in class UpdateVolume: Determine if the user is authorized to make this request.
Image::annotations() — Method in class Image: The annotations on this image.
ImageAnnotationLabel::annotation() — Method in class ImageAnnotationLabel: The annotation, this annotation label belongs to.
$ TrackObject#annotation — Property in class TrackObject: The annotation that defines the initial object to track.
LabelTree::addMember() — Method in class LabelTree: Add a new member with a certain role.
LabelTree::authorizedProjects() — Method in class LabelTree: The projects that are authorized to use this private label tree.
AnanasServiceProvider — Class in namespace Biigle\Modules\Ananas
AnnotationAssistanceRequest — Class in namespace Biigle\Modules\Ananas: With an annotation assistance request a BIIGLE user can consult some externa person for the label of a specific annotation.
AnnotationAssistanceRequest::annotation() — Method in class AnnotationAssistanceRequest: The annotation to which the assistance request belongs.
AnnotationAssistanceRequestFactory — Class in namespace Biigle\Modules\Ananas\Database\Factories
AnnotationAssistanceRequestController — Class in namespace Biigle\Modules\Ananas\Http\Controllers\Api
AnnotationAssistanceRequestController — Class in namespace Biigle\Modules\Ananas\Http\Controllers\Views
$ StoreAnnotationAssistanceRequest#annotation — Property in class StoreAnnotationAssistanceRequest: The annotation to create the request for.
StoreAnnotationAssistanceRequest::authorize() — Method in class StoreAnnotationAssistanceRequest: Determine if the user is authorized to make this request.
$ UpdateAnnotationAssistanceRequest#ananas — Property in class UpdateAnnotationAssistanceRequest: The request to update.
UpdateAnnotationAssistanceRequest::authorize() — Method in class UpdateAnnotationAssistanceRequest: Determine if the user is authorized to make this request.
AnnotationAssistanceRequest — Class in namespace Biigle\Modules\Ananas\Notifications
AnnotationAssistanceResponse — Class in namespace Biigle\Modules\Ananas\Notifications
AnnotationAssistanceRequestObserver — Class in namespace Biigle\Modules\Ananas\Observers
AnnotationAssistanceRequestPolicy — Class in namespace Biigle\Modules\Ananas\Policies
AnnotationAssistanceRequestPolicy::access() — Method in class AnnotationAssistanceRequestPolicy: Determine if the given assistance request can be accessed by the user.
StoreColorSortSequence::authorize() — Method in class StoreColorSortSequence: Determine if the user is authorized to make this request.
AnnotationCatalogController — Class in namespace Biigle\Modules\Largo\Http\Controllers\Views\LabelTrees
StoreLargoSession::authorize() — Method in class StoreLargoSession: Determine if the user is authorized to make this request.
StoreProjectLargoSession::authorize() — Method in class StoreProjectLargoSession: Determine if the user is authorized to make this request.
StoreVolumeLargoSession::authorize() — Method in class StoreVolumeLargoSession: Determine if the user is authorized to make this request.
ApplyLargoSession — Class in namespace Biigle\Modules\Largo\Jobs
ApplyLargoSession::applyDismissedLabels() — Method in class ApplyLargoSession: Detach annotation labels that were dismissed in a Largo session.
ApplyLargoSession::applyChangedLabels() — Method in class ApplyLargoSession: Attach annotation labels that were chosen in a Largo session.
$ GenerateAnnotationPatch#annotation — Property in class GenerateAnnotationPatch: The the annotation to generate a patch for.
$ RemoveAnnotationPatches#annotationIds — Property in class RemoveAnnotationPatches: Map of the annotation ID to the image/video UUID of the annotation whose patch should be removed.
AnnotationObserver — Class in namespace Biigle\Modules\Largo\Observers
ComputeImage::authorize() — Method in class ComputeImage: Determine if the user is authorized to make this request.
ComputeVolume::authorize() — Method in class ComputeVolume: Determine if the user is authorized to make this request.
Image::accessLaserpointsArray() — Method in class Image: Get an attribute from the laser points array.
StoreProjectReport::authorize() — Method in class StoreProjectReport: Determine if the user is authorized to make this request.
StoreVolumeReport::authorize() — Method in class StoreVolumeReport: Determine if the user is authorized to make this request.
ReportPolicy::access() — Method in class ReportPolicy: Determine if the given report can be accessed by the user.
AbundanceReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Projects\ImageAnnotations
AnnotationLocationReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Projects\ImageAnnotations
AnnotationReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Projects\ImageAnnotations
AreaReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Projects\ImageAnnotations
AbundanceReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Volumes\ImageAnnotations
AbundanceReportGenerator::aggregateChildLabels() — Method in class AbundanceReportGenerator: Aggregate the number of child labels to the number of the highest parent label and remove the child labels from the list.
AnnotationLocationReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Volumes\ImageAnnotations
AnnotationReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Volumes\ImageAnnotations
AreaReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Volumes\ImageAnnotations
$ VolumeReportGenerator#annotationSession — Property in class VolumeReportGenerator: Cache for the annotation session the report may be restricted to.
ShowPublicLabelTreeExport::authorize() — Method in class ShowPublicLabelTreeExport: Determine if the user is authorized to make this request.
Export::addIds() — Method in class Export: Add more model IDs to this export.
Export::addToZip() — Method in class Export: Add the file of this report to a zip.
ArchiveManager — Class in namespace Biigle\Modules\Sync\Support\Import
LabelTreeImport::attachLabelTreeMembers() — Method in class LabelTreeImport: Attach members to imported label trees.
$ InAppNotification#action — Property in class InAppNotification: Label of the action link.
$ InAppNotification#actionLink — Property in class InAppNotification: Action link (URL).
AnnotationLabelPolicy — Class in namespace Biigle\Policies
AnnotationPolicy — Class in namespace Biigle\Policies
AnnotationPolicy::access() — Method in class AnnotationPolicy: Determine if the user may access the given annotation.
AnnotationPolicy::attachLabel() — Method in class AnnotationPolicy: Determine if the user can attach the given label to the given annotation.
ApiTokenPolicy — Class in namespace Biigle\Policies
LabelTreePolicy::access() — Method in class LabelTreePolicy: Determine if the given label tree can be accessed by the user.
LabelTreePolicy::addMember() — Method in class LabelTreePolicy: Determine if the user can add members to the given label tree.
LabelTreeVersionPolicy::access() — Method in class LabelTreeVersionPolicy: Determine if the given label tree version can be accessed by the user.
ProjectPolicy::access() — Method in class ProjectPolicy: Determine if the given project can be accessed by the user.
VolumeFilePolicy::access() — Method in class VolumeFilePolicy: Determine if the user can access the given file.
VolumeFilePolicy::addAnnotation() — Method in class VolumeFilePolicy: Determine if the user can add an annotation to given file.
VolumeFilePolicy::attachLabel() — Method in class VolumeFilePolicy: Determine if the user can attach the given label to the given file.
VolumePolicy::access() — Method in class VolumePolicy: Determine if the given volume can be accessed by the user.
Project::admins() — Method in class Project: All members of this project with the admin role.
Project::addUserId() — Method in class Project: Adds the user with the given role to this project.
Project::addVolumeId() — Method in class Project: Adds a volume to this project if it wasn't already.
Project::authorizedLabelTrees() — Method in class Project: The private label trees that authorized this project to use them.
AppServiceProvider — Class in namespace Biigle\Providers
AuthServiceProvider — Class in namespace Biigle\Providers
ApiGuard — Class in namespace Biigle\Services\Auth
$ Modules#apidocPaths — Property in class Modules: Additional source paths to generate the API documentation from.
Modules::addMixin() — Method in class Modules
User::apiTokens() — Method in class User: Api tokens of this user.
Video::annotations() — Method in class Video: The annotations that belong to this video.
VideoAnnotationLabel::annotation() — Method in class VideoAnnotationLabel: The video annotation, this annotation label belongs to.
Volume::annotationSessions() — Method in class Volume: The annotation sessions of this volume.
Volume::activeAnnotationSession() — Method in class Volume: The active annotation sessions of this volume (if any).
VolumeFile::annotations() — Method in class VolumeFile: The annotations that belong to this file.

B

FileCache::batch() — Method in class FileCache: Perform a callback with the paths of many cached files. Use this to prevent pruning of the files while they are processed.
FileCache::batchOnce() — Method in class FileCache: Like batch but deletes the cached files afterwards (if they are not used somewhere else).
FileCache::batch() — Method in class FileCache: Perform a callback with the paths of many cached files. Use this to prevent pruning of the files while they are processed.
FileCache::batchOnce() — Method in class FileCache: Like batch but deletes the cached files afterwards (if they are not used somewhere else).
FileCacheServiceProvider::boot() — Method in class FileCacheServiceProvider: Bootstrap the application events.
FileCacheFake::batch() — Method in class FileCacheFake: Perform a callback with the paths of many cached files. Use this to prevent pruning of the files while they are processed.
FileCacheFake::batchOnce() — Method in class FileCacheFake: Like batch but deletes the cached files afterwards (if they are not used somewhere else).
ElementsServiceProvider::boot() — Method in class ElementsServiceProvider: Bootstrap the application events.
VolumeFileLabelController::baseStore() — Method in class VolumeFileLabelController: Creates a new label for the specified file.
BrowserController — Class in namespace Biigle\Http\Controllers\Api\Volumes
$ UpdateFederatedSearchIndex#backoff — Property in class UpdateFederatedSearchIndex: Retry a failed job after 5 minutes.
AnanasServiceProvider::boot() — Method in class AnanasServiceProvider: Bootstrap the application events.
AnnotationAssistanceRequestPolicy::before() — Method in class AnnotationAssistanceRequestPolicy: Intercept all checks.
ColorSortServiceProvider::boot() — Method in class ColorSortServiceProvider: Bootstrap the application events.
GeoServiceProvider::boot() — Method in class GeoServiceProvider: Bootstrap the application events.
LargoServiceProvider::boot() — Method in class LargoServiceProvider: Bootstrap the application events.
LaserpointsServiceProvider::boot() — Method in class LaserpointsServiceProvider: Bootstrap the application events.
ReportPolicy::before() — Method in class ReportPolicy: Intercept all checks.
ReportsServiceProvider::boot() — Method in class ReportsServiceProvider: Bootstrap the application events.
BasicReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Projects\ImageAnnotations
BasicReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Projects\ImageLabels
BasicReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Volumes\ImageAnnotations
BasicReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Volumes\ImageLabels
SyncServiceProvider::boot() — Method in class SyncServiceProvider: Bootstrap the application events.
AnnotationPolicy::before() — Method in class AnnotationPolicy: Intercept all checks.
LabelTreePolicy::before() — Method in class LabelTreePolicy: Intercept all checks.
LabelTreeVersionPolicy::before() — Method in class LabelTreeVersionPolicy: Intercept all checks.
ProjectPolicy::before() — Method in class ProjectPolicy: Intercept all checks.
VolumeFilePolicy::before() — Method in class VolumeFilePolicy: Intercept all checks.
VolumePolicy::before() — Method in class VolumePolicy: Intercept all checks.
AppServiceProvider::boot() — Method in class AppServiceProvider: Bootstrap any application services.
AuthServiceProvider::boot() — Method in class AuthServiceProvider: Register any authentication / authorization services.
BroadcastServiceProvider — Class in namespace Biigle\Providers
BroadcastServiceProvider::boot() — Method in class BroadcastServiceProvider: Bootstrap any application services.
EventServiceProvider::boot() — Method in class EventServiceProvider: Register any events for your application.
RouteServiceProvider::boot() — Method in class RouteServiceProvider: Define your route model bindings, pattern filters, etc.

C

$ Annotation#casts — Property in class Annotation: The attributes that should be casted to native types.
$ AnnotationLabel#casts — Property in class AnnotationLabel: The attributes that should be casted to native types.
$ AnnotationSession#casts — Property in class AnnotationSession: The attributes that should be casted to native types.
Kernel::commands() — Method in class Kernel: Register the Closure based commands for the application.
LabelSourceAdapterContract::create() — Method in class LabelSourceAdapterContract: Create the label (or labels) from the label source based on an API request.
$ FederatedSearchInstance#casts — Property in class FederatedSearchInstance: The attributes that should be casted to native types.
FederatedSearchInstance::createLocalToken() — Method in class FederatedSearchInstance: Create a new local token and store the sha256 hash in the attribute of this model.
$ FederatedSearchModel#casts — Property in class FederatedSearchModel: The attributes that should be casted to native types.
FileCache::clear() — Method in class FileCache: Delete all unused cached files.
$ FileCache#config — Property in class FileCache: File cache configuration.
FileCache::clear() — Method in class FileCache: Delete all unused cached files.
FileCache::cacheFromResource() — Method in class FileCache: Store the file from the given resource to a cached file.
ClearFileCache — Class in namespace Biigle\FileCache\Listeners
FileCacheFake::clear() — Method in class FileCacheFake: Delete all unused cached files.
$ ElementsAdapter#client — Property in class ElementsAdapter
$ ElementsAdapter#cache — Property in class ElementsAdapter: File information cache.
$ ElementsAdapter#contentCache — Property in class ElementsAdapter: Directory content cache.
ElementsAdapter::createDirectory() — Method in class ElementsAdapter: {@inheritdoc}
ElementsAdapter::copy() — Method in class ElementsAdapter: {@inheritdoc}
Controller — Class in namespace Biigle\Http\Controllers\Api
LoginController::credentials() — Method in class LoginController: Get the needed authorization credentials from the request.
RegisterController::create() — Method in class RegisterController: Create a new user instance after a valid registration.
ResetPasswordController::credentials() — Method in class ResetPasswordController: Get the password reset credentials from the request.
Controller — Class in namespace Biigle\Http\Controllers
SystemMessagesController::create() — Method in class SystemMessagesController: Shows the admin new system message page.
Controller — Class in namespace Biigle\Http\Controllers\Views
LabelTreeVersionsController::create() — Method in class LabelTreeVersionsController: Show the create label tree version page.
LabelTreesController::create() — Method in class LabelTreesController: Show the create label tree page.
ProjectsController::create() — Method in class ProjectsController: Shows the create project page.
VolumeController::create() — Method in class VolumeController: Shows the create volume page.
$ StoreLabelTreeMerge#create — Property in class StoreLabelTreeMerge: Flat array of labels to create.
UpdateFederatedSearchInstance::checkRemoteConnection() — Method in class UpdateFederatedSearchInstance: Check the connection to the remote instance.
$ Image#casts — Property in class Image: The attributes that should be casted to native types.
$ ImageAnnotation#casts — Property in class ImageAnnotation: The attributes that should be casted to native types.
$ ImageAnnotationLabel#casts — Property in class ImageAnnotationLabel: The attributes that should be casted to native types.
CreateNewImagesOrVideos — Class in namespace Biigle\Jobs
CreateNewImagesOrVideos::createFiles() — Method in class CreateNewImagesOrVideos: Create an array to be inserted as new image or video models.
ProcessNewImage::collectMetadata() — Method in class ProcessNewImage: Collect image metadata.
TrackObject::createInputJson() — Method in class TrackObject: Create the JSON file that is the input for the object tracking script.
UpdateFederatedSearchIndex::cleanupDanglingModels() — Method in class UpdateFederatedSearchIndex: Delete all federated search models of the current instance that are not accessible by any user.
$ Label#casts — Property in class Label: The attributes that should be casted to native types.
Label::children() — Method in class Label: The child labels of this label if they are ordered in a tree-like structue.
Label::canBeDeleted() — Method in class Label: Determines if the label can be deleted.
$ LabelTree#casts — Property in class LabelTree: The attributes that should be casted to native types.
LabelTree::canBeDeleted() — Method in class LabelTree: Determines if the label tree can be safely deleted.
$ LabelTreeVersion#casts — Property in class LabelTreeVersion: The attributes that should be casted to native types.
CleanupImageThumbnails — Class in namespace Biigle\Listeners
CleanupImageTiles — Class in namespace Biigle\Listeners
CleanupVideoThumbnails — Class in namespace Biigle\Listeners
CreateRedisLogger — Class in namespace Biigle\Logging
$ LogManager#channel — Property in class LogManager: The default logging channel.
$ AnnotationAssistanceRequest#casts — Property in class AnnotationAssistanceRequest: The attributes that should be casted to native types.
AnnotationAssistanceRequestController::create() — Method in class AnnotationAssistanceRequestController: Create a new annotation assistance request.
AnnotationAssistanceRequestObserver::created() — Method in class AnnotationAssistanceRequestObserver: Handle the event of creatinga new assistance request.
ColorSortServiceProvider — Class in namespace Biigle\Modules\ColorSort
ComputeNewSequence — Class in namespace Biigle\Modules\ColorSort\Jobs
$ Sequence#casts — Property in class Sequence: The attributes that should be casted to native types.
Config — Class in namespace Biigle\Modules\Largo\Console\Commands
$ GenerateMissing#count — Property in class GenerateMissing: Number of annotations missing patches.
$ StoreLargoSession#changedImageAnnotations — Property in class StoreLargoSession: The changed_image_annotations request attribute.
$ StoreLargoSession#changedVideoAnnotations — Property in class StoreLargoSession: The changed_video_annotations request attribute.
$ ApplyLargoSession#changedImageAnnotations — Property in class ApplyLargoSession: Array of all changed image annotation IDs for each label.
$ ApplyLargoSession#changedVideoAnnotations — Property in class ApplyLargoSession: Array of all changed video annotation IDs for each label.
$ RemoveAnnotationPatches#chunkSize — Property in class RemoveAnnotationPatches: Number of annotations to start chunking of this job.
Config — Class in namespace Biigle\Modules\Laserpoints\Console\Commands
LaserpointsController::computeImage() — Method in class LaserpointsController: Compute distance between laser points for an image.
LaserpointsController::computeVolume() — Method in class LaserpointsController: Compute distance between laser points for a volume.
ComputeImage — Class in namespace Biigle\Modules\Laserpoints\Http\Requests
ComputeVolume — Class in namespace Biigle\Modules\Laserpoints\Http\Requests
Image::convert() — Method in class Image: Converts a regular Biigle image to a Laserpoints image.
Volume::convert() — Method in class Volume: Converts a regular Biigle volume to a Laserpoints volume.
ReportObserver::creating() — Method in class ReportObserver: Fill the attributes that depend on the source.
$ Report#casts — Property in class Report: The attributes that should be casted to native types.
CsvFile — Class in namespace Biigle\Modules\Reports\Support
File::close() — Method in class File: Close the file.
CsvReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Projects\ImageAnnotations
CsvReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Projects\ImageLabels
CsvReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Projects\VideoAnnotations
CsvReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Projects\VideoLabels
AbundanceReportGenerator::createCsv() — Method in class AbundanceReportGenerator: Create a CSV file for a single sheet of the spreadsheet of this report.
AnnotationLocationReportGenerator::createNdJSON() — Method in class AnnotationLocationReportGenerator: Create the newline delimited GeoJSON file.
AreaReportGenerator::createCsv() — Method in class AreaReportGenerator: Create a CSV file for a single sheet of the spreadsheet of this report.
BasicReportGenerator::createCsv() — Method in class BasicReportGenerator: Create a CSV file for a single plot of this report.
CsvReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Volumes\ImageAnnotations
CsvReportGenerator::createCsv() — Method in class CsvReportGenerator: Create a CSV file for this report.
ExtendedReportGenerator::createCsv() — Method in class ExtendedReportGenerator: Create a CSV file for a single sheet of the spreadsheet of this report.
FullReportGenerator::createCsv() — Method in class FullReportGenerator: Create a CSV file for a single sheet of the spreadsheet of this report.
ImageLocationReportGenerator::createNdJSON() — Method in class ImageLocationReportGenerator: Create the newline delimited GeoJSON file.
BasicReportGenerator::createCsv() — Method in class BasicReportGenerator: Create a CSV file for a single sheet of the spreadsheet of this report.
CsvReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Volumes\ImageLabels
CsvReportGenerator::createCsv() — Method in class CsvReportGenerator: Create a CSV file for this report.
ImageLocationReportGenerator::createNdJSON() — Method in class ImageLocationReportGenerator: Create the newline delimited GeoJSON file.
$ PythonScriptRunner#code — Property in class PythonScriptRunner: Exit code of the exec call.
CsvReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Volumes\VideoAnnotations
CsvReportGenerator::createCsv() — Method in class CsvReportGenerator: Create a CSV file for this report.
CsvReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Volumes\VideoLabels
CsvReportGenerator::createCsv() — Method in class CsvReportGenerator: Create a CSV file for this report.
Volume::convert() — Method in class Volume: Converts a regular Biigle volume to an export volume.
Controller — Class in namespace Biigle\Modules\Sync\Http\Controllers\Api\Export
Export::cleanUp() — Method in class Export: Clean up any temporary files.
ImageAnnotationExport::cleanUp() — Method in class ImageAnnotationExport: Clean up any temporary files.
ImageAnnotationLabelExport::cleanUp() — Method in class ImageAnnotationLabelExport: Clean up any temporary files.
ImageExport::cleanUp() — Method in class ImageExport: Clean up any temporary files.
ImageLabelExport::cleanUp() — Method in class ImageLabelExport: Clean up any temporary files.
PublicLabelExport::cleanUp() — Method in class PublicLabelExport: Clean up any temporary files.
VideoAnnotationExport::cleanUp() — Method in class VideoAnnotationExport: Clean up any temporary files.
VideoAnnotationLabelExport::cleanUp() — Method in class VideoAnnotationLabelExport: Clean up any temporary files.
VideoExport::cleanUp() — Method in class VideoExport: Clean up any temporary files.
VideoLabelExport::cleanUp() — Method in class VideoLabelExport: Clean up any temporary files.
Import::collectJson() — Method in class Import: Read a JSON file containing an array and wrap it in a Laravel collection.
ProjectObserver::creating() — Method in class ProjectObserver: A project must not be created without having a creator.
ProjectObserver::created() — Method in class ProjectObserver: Handle actions for newly created projects.
VolumeObserver::creating() — Method in class VolumeObserver: A volume must not be created without having a creator.
ApiTokenPolicy::create() — Method in class ApiTokenPolicy: Determine if the given user can create API tokens.
CachedPolicy — Class in namespace Biigle\Policies: A policy for caching the return values of the authorization rules during a request.
$ CachedPolicy#cache — Property in class CachedPolicy: The cache instance to use for caching policies.
FederatedSearchInstancePolicy::create() — Method in class FederatedSearchInstancePolicy: Determine whether the user can create instances.
LabelTreePolicy::create() — Method in class LabelTreePolicy: Determine if the given user can create label trees.
LabelTreePolicy::createLabel() — Method in class LabelTreePolicy: Determine if the user can add labels to the given label tree.
LabelTreeVersionPolicy::create() — Method in class LabelTreeVersionPolicy: Determine if the given user can create version of a label tree.
ProjectPolicy::create() — Method in class ProjectPolicy: Determine if the given user can create projects.
SystemMessagePolicy::create() — Method in class SystemMessagePolicy: Determine whether the user can create systemMessages.
UserPolicy::create() — Method in class UserPolicy: Determine if the given user can create users.
Project::creator() — Method in class Project: The user that created this project. On creation this user is automatically added to the project's users with the 'admin' role by the ProjectObserver.
Project::changeRole() — Method in class Project: Changes the role of an existing user in this project.
RouteServiceProvider::configureRateLimiting() — Method in class RouteServiceProvider: Configure the rate limiters for the application.
$ GreaterThan#compare — Property in class GreaterThan: The value to compare.
$ LessThan#compare — Property in class LessThan: The value to compare.
$ WormsAdapter#client — Property in class WormsAdapter: SOAP client for the WoRMS webservice.
WormsAdapter::create() — Method in class WormsAdapter: Create the label (or labels) from the label source based on an API request.
WormsAdapter::createSingleLabel() — Method in class WormsAdapter: Create (and save) a single label.
WormsAdapter::createRecursiveLabels() — Method in class WormsAdapter: Create (and save) a label and all WoRMS parents that don't already exist in the tree.
$ Modules#controllerMixins — Property in class Modules: The controller mixins of every module.
Modules::callControllerMixins() — Method in class Modules: Call all controller mixins registered for a certain controller.
$ SystemMessage#casts — Property in class SystemMessage: The attributes that should be casted to native types.
ChecksMetadataStrings — Class in namespace Biigle\Traits
$ ParsesMetadata#columnSynonyms — Property in class ParsesMetadata: Column name synonyms.
$ User#casts — Property in class User: The attributes that should be casted to native types.
User::checkCanBeDeleted() — Method in class User: Checks if the user can be deleted.
$ Video#casts — Property in class Video: The attributes that should be casted to native types.
$ VideoAnnotation#casts — Property in class VideoAnnotation: The attributes that should be casted to native types.
$ Volume#casts — Property in class Volume: The attributes that should be casted to native types.
Volume::creator() — Method in class Volume: The user that created the volume.
$ VolumeFileLabel#casts — Property in class VolumeFileLabel: The attributes that should be casted to native types.

D

$ Apidoc#description — Property in class Apidoc: The console command description.
$ MigrateTiledImages#description — Property in class MigrateTiledImages: The console command description.
$ NewUser#description — Property in class NewUser: The console command description.
$ PruneNotifications#description — Property in class PruneNotifications: The console command description.
$ UpdateImageMetadata#description — Property in class UpdateImageMetadata: The console command description.
$ UpdateImageMetadata#dryRun — Property in class UpdateImageMetadata: Is this a dry run?
UpdateImageMetadata::dispatchReprocessJobs() — Method in class UpdateImageMetadata: Dispatches jobs to process all images anew.
$ UpdateVideoMetadata#description — Property in class UpdateVideoMetadata: The console command description.
$ UpdateVideoMetadata#dryRun — Property in class UpdateVideoMetadata: Is this a dry run?
$ UpdateVolumeUrls#description — Property in class UpdateVolumeUrls: The console command description.
$ UpdateVolumeUrls#dryRun — Property in class UpdateVolumeUrls: Is this a dry run?
$ UpdateVolumeUrls#disks — Property in class UpdateVolumeUrls: Available storage disks.
$ Handler#dontReport — Property in class Handler: A list of the exception types that are not reported.
$ Handler#dontFlash — Property in class Handler: A list of the inputs that are never flashed for validation exceptions.
$ PruneFileCache#description — Property in class PruneFileCache: The console command description.
FileCache::delete() — Method in class FileCache: Delete a cached file it it is not used.
ElementsAdapter::directoryExists() — Method in class ElementsAdapter: {@inheritdoc}
ElementsAdapter::delete() — Method in class ElementsAdapter: {@inheritdoc}
ElementsAdapter::deleteDirectory() — Method in class ElementsAdapter: {@inheritdoc}
AnnotationSessionController::destroy() — Method in class AnnotationSessionController: Removes the annotation session.
ApiTokenController::destroy() — Method in class ApiTokenController: Removes the specified API token.
FederatedSearchInstanceController::destroy() — Method in class FederatedSearchInstanceController: Disonnect a remote federated search instance.
ImageAnnotationController::destroy() — Method in class ImageAnnotationController: Removes the annotation.
ImageAnnotationLabelController::destroy() — Method in class ImageAnnotationLabelController: Deletes the specified annotation label.
ImageController::destroy() — Method in class ImageController: Delete an image.
LabelController::destroy() — Method in class LabelController: Delete a label.
LabelTreeAuthorizedProjectController::destroy() — Method in class LabelTreeAuthorizedProjectController: Remove authorization of a project to use a private label tree.
LabelTreeController::destroy() — Method in class LabelTreeController: Removes the specified label tree.
LabelTreeUserController::destroy() — Method in class LabelTreeUserController: Removes the specified member from the specified label tree.
LabelTreeVersionController::destroy() — Method in class LabelTreeVersionController: Removes the specified label tree version.
NotificationController::destroy() — Method in class NotificationController: Delete a read notification.
ProjectController::destroy() — Method in class ProjectController: Removes the specified project.
ProjectLabelTreeController::destroy() — Method in class ProjectLabelTreeController: Removes a label tree form the specified project.
ProjectUserController::destroy() — Method in class ProjectUserController: Removes a user form the specified project.
ProjectVolumeController::destroy() — Method in class ProjectVolumeController: Removes the specified volume from the specified project.
SystemMessageController::destroy() — Method in class SystemMessageController: Delete an unpublished system message.
UserController::destroy() — Method in class UserController: Removes the specified user.
UserController::destroyOwn() — Method in class UserController: Removes the own user.
UserPinnedProjectController::destroy() — Method in class UserPinnedProjectController: Unpin a project.
VideoAnnotationController::destroy() — Method in class VideoAnnotationController: Removes a video annotation.
VideoAnnotationLabelController::destroy() — Method in class VideoAnnotationLabelController: Detach a label
VideoController::destroy() — Method in class VideoController: Delete a video.
VolumeFileLabelController::destroy() — Method in class VolumeFileLabelController: Deletes the specified file label.
IfdoController::destroy() — Method in class IfdoController: Delete an iFDO file attached to a volume
UsersController::delete() — Method in class UsersController: Shows the admin delete user page.
DashboardController — Class in namespace Biigle\Http\Controllers\Views
ManualController::documentationArticle() — Method in class ManualController: Show a documentation article.
DestroyAnnotationSession — Class in namespace Biigle\Http\Requests
DestroyImage — Class in namespace Biigle\Http\Requests
DestroyLabel — Class in namespace Biigle\Http\Requests
DestroyLabelTree — Class in namespace Biigle\Http\Requests
DestroyLabelTreeUser — Class in namespace Biigle\Http\Requests
DestroyLabelTreeVersion — Class in namespace Biigle\Http\Requests
DestroyOwnUser — Class in namespace Biigle\Http\Requests
DestroyPinnedProject — Class in namespace Biigle\Http\Requests
DestroyProjectUser — Class in namespace Biigle\Http\Requests
DestroyUser — Class in namespace Biigle\Http\Requests
$ DestroyUser#destroyUser — Property in class DestroyUser: The user to delete.
DestroyVideo — Class in namespace Biigle\Http\Requests
DestroyVideoAnnotationLabel — Class in namespace Biigle\Http\Requests
DestroyVolumeFile — Class in namespace Biigle\Http\Requests
$ Image#dates — Property in class Image: The attributes that should be mutated to dates.
DeleteVolume — Class in namespace Biigle\Jobs
$ MigrateTiledImage#disk — Property in class MigrateTiledImage: Name of the storage disk that holds the ZIP files of tiled images.
$ ProcessNewImage#deleteWhenMissingModels — Property in class ProcessNewImage: Ignore this job if the image does not exist any more.
$ ProcessNewVideo#deleteWhenMissingModels — Property in class ProcessNewVideo: Ignore this job if the video does not exist any more.
$ ProcessNewVolumeFiles#deleteWhenMissingModels — Property in class ProcessNewVolumeFiles: Ignore this job if the volume does not exist any more.
$ TileSingleImage#deleteWhenMissingModels — Property in class TileSingleImage: Ignore this job if the image does not exist any more.
$ TrackObject#deleteWhenMissingModels — Property in class TrackObject: Ignore this job if the annotation does not exist any more.
$ UpdateFederatedSearchIndex#deleteWhenMissingModels — Property in class UpdateFederatedSearchIndex: Ignore this job if the volume does not exist any more.
LabelTree::detachUnauthorizedProjects() — Method in class LabelTree: Detaches all projects that are not among the authorized projects.
$ Publish#description — Property in class Publish: The console command description.
AnnotationAssistanceRequestFactory::definition() — Method in class AnnotationAssistanceRequestFactory: Define the model's default state.
AnnotationAssistanceRequestController::destroy() — Method in class AnnotationAssistanceRequestController: Delete an annotation assistance request.
AnnotationAssistanceRequestPolicy::destroy() — Method in class AnnotationAssistanceRequestPolicy: Determine if the given assistance request can be deleted by the user.
$ Publish#description — Property in class Publish: The console command description.
VolumeColorSortSequenceController::destroy() — Method in class VolumeColorSortSequenceController: Delete a color sort sequence.
$ ComputeNewSequence#deleteWhenMissingModels — Property in class ComputeNewSequence: Ignore this job if the annotation does not exist any more.
ImageObserver::deleted() — Method in class ImageObserver: Updates the color sort sequences containing the ID of the deleted image.
$ Publish#description — Property in class Publish: The console command description.
$ Config#description — Property in class Config: The console command description.
$ GenerateMissing#description — Property in class GenerateMissing: The console command description.
$ MigratePatchStorage#description — Property in class MigratePatchStorage: The console command description.
$ MigratePatchStorage#disk — Property in class MigratePatchStorage: Largo patch storage disk.
$ MigratePatchStorage#dryRun — Property in class MigratePatchStorage: Specifies if this is a dry run.
$ Publish#description — Property in class Publish: The console command description.
$ StoreLargoSession#dismissedImageAnnotations — Property in class StoreLargoSession: The dismissed_image_annotations request attribute.
$ StoreLargoSession#dismissedVideoAnnotations — Property in class StoreLargoSession: The dismissed_video_annotations request attribute.
$ ApplyLargoSession#dismissedImageAnnotations — Property in class ApplyLargoSession: Array of all dismissed image annotation IDs for each label.
$ ApplyLargoSession#dismissedVideoAnnotations — Property in class ApplyLargoSession: Array of all dismissed video annotation IDs for each label.
ApplyLargoSession::deleteDanglingAnnotations() — Method in class ApplyLargoSession: Delete annotations that now have no more labels attached.
$ GenerateAnnotationPatch#deleteWhenMissingModels — Property in class GenerateAnnotationPatch: Ignore this job if the annotation does not exist any more.
RemoveAnnotationPatches::deletePatches() — Method in class RemoveAnnotationPatches: Delete the annotation patches.
RemoveImageAnnotationPatches::deletePatches() — Method in class RemoveImageAnnotationPatches: Delete the annotation patches.
RemoveVideoAnnotationPatches::deletePatches() — Method in class RemoveVideoAnnotationPatches: Delete the annotation patches.
AnnotationObserver::deleting() — Method in class AnnotationObserver: Handle the event of deleting a single annotation.
$ Config#description — Property in class Config: The console command description.
$ Publish#description — Property in class Publish: The console command description.
$ Job#distance — Property in class Job: Distance between laser points im cm to use for computation.
$ ProcessDelphiJob#distance — Property in class ProcessDelphiJob: Distance between laser points im cm to use for computation.
$ ProcessDelphiJob#deleteWhenMissingModels — Property in class ProcessDelphiJob: Ignore this job if the image does not exist any more.
$ ProcessImageManualJob#deleteWhenMissingModels — Property in class ProcessImageManualJob: Ignore this job if the image does not exist any more.
$ ProcessManualJob#distance — Property in class ProcessManualJob: Distance between laser points im cm to use for computation.
$ ProcessManualJob#deleteWhenMissingModels — Property in class ProcessManualJob: Ignore this job if the image does not exist any more.
$ ProcessVolumeDelphiJob#deleteWhenMissingModels — Property in class ProcessVolumeDelphiJob: Ignore this job if the image does not exist any more.
DelphiApply — Class in namespace Biigle\Modules\Laserpoints\Support: Wrapper for the Delphi laser points detection script.
DelphiGather — Class in namespace Biigle\Modules\Laserpoints\Support: Wrapper for the Delphi gather script.
Detect — Class in namespace Biigle\Modules\Laserpoints\Support: Wrapper for the manual laser points detection script.
$ Publish#description — Property in class Publish: The console command description.
ReportFactory::definition() — Method in class ReportFactory: Define the model's default state.
ReportTypeFactory::definition() — Method in class ReportTypeFactory: Define the model's default state.
ReportsController::destroy() — Method in class ReportsController: Delete a report.
ExportAreaController::destroy() — Method in class ExportAreaController: Remove the export area.
ProjectObserver::deleted() — Method in class ProjectObserver: Update the source name of reports when the source is deleted.
ReportObserver::deleted() — Method in class ReportObserver: Remove report file of a report that should be deleted.
UserObserver::deleting() — Method in class UserObserver: Remove report files of a user that should be deleted.
VolumeObserver::deleted() — Method in class VolumeObserver: Update the source name of reports when the source is deleted.
ReportPolicy::destroy() — Method in class ReportPolicy: Determine if the given report can be destroyed by the user.
Report::deleteFile() — Method in class Report: Delete the file that belongs to this report.
$ CsvFile#delimiter — Property in class CsvFile: Field delimiter.
File::delete() — Method in class File: Delete the file.
$ Prune#description — Property in class Prune: The console command description.
$ Publish#description — Property in class Publish: The console command description.
$ Uuids#description — Property in class Uuids: The console command description.
ImportController::destroy() — Method in class ImportController
$ ArchiveManager#disk — Property in class ArchiveManager: Storage disk for uploaded import archives.
ArchiveManager::delete() — Method in class ArchiveManager: Delete the files of an import.
ImageObserver::deleting() — Method in class ImageObserver: Handle the event of deleting a single image.
VideoObserver::deleting() — Method in class VideoObserver: Handle the event of deleting a single video.
VolumeObserver::deleting() — Method in class VolumeObserver: Handle the deletion of a volume.
AnnotationLabelPolicy::destroy() — Method in class AnnotationLabelPolicy: Determine if the user can delete the given annotation label.
AnnotationPolicy::destroy() — Method in class AnnotationPolicy: Determine if the user may delete the given annotation.
ApiTokenPolicy::destroy() — Method in class ApiTokenPolicy: Determine if the given token can be deleted by the user.
FederatedSearchInstancePolicy::destroy() — Method in class FederatedSearchInstancePolicy: Determine whether the user can delete the instance.
LabelPolicy::destroy() — Method in class LabelPolicy: Determine if the user can remove the given label.
LabelTreePolicy::destroy() — Method in class LabelTreePolicy: Determine if the given label tree can be deleted by the user.
LabelTreeVersionPolicy::destroy() — Method in class LabelTreeVersionPolicy: Determine if the given label tree version can be deleted by the user.
ProjectPolicy::destroy() — Method in class ProjectPolicy: Determine if the given project can be deleted by the user.
SystemMessagePolicy::destroy() — Method in class SystemMessagePolicy: Determine whether the user can delete the systemMessage.
UserPolicy::destroy() — Method in class UserPolicy: Determine if the given user can delete the user.
VolumeFileLabelPolicy::destroy() — Method in class VolumeFileLabelPolicy: Determine if the user can delete the given image label.
VolumeFilePolicy::destroy() — Method in class VolumeFilePolicy: Determine if the user can delete the given file.
VolumePolicy::destroy() — Method in class VolumePolicy: Determine if the given volume can be deleted by the user.
$ User#dates — Property in class User: The attributes that should be mutated to dates.
Volume::deleteIfdo() — Method in class Volume: Delete the iFDO metadata file linked with this volume.
Volume::downloadIfdo() — Method in class Volume: Download the iFDO that is attached to this volume.

E

FileCache::exists() — Method in class FileCache: Check if a file exists.
FileCache::exists() — Method in class FileCache: Check if a file exists.
FileCache::existsRemote() — Method in class FileCache: Check for existence of a remte file.
FileCache::existsDisk() — Method in class FileCache: Check for existence of a file from a storage disk.
FileCache::ensurePathExists() — Method in class FileCache: Creates the cache directory if it doesn't exist yet.
FileCache::encodeUrl() — Method in class FileCache: Escape special characters (e.g. spaces) that may occur in parts of a HTTP URL.
FileCacheFake::exists() — Method in class FileCacheFake: Check if a file exists.
ElementsAdapter — Class in namespace Biigle\Filesystem
ElementsServiceProvider — Class in namespace Biigle\Filesystem
ElementsAdapter — Class in namespace Biigle\Flysystem\Elements
UsersController::edit() — Method in class UsersController: Shows the admin edit user page.
VolumeController::edit() — Method in class VolumeController: Shows the volume edit page.
EncryptCookies — Class in namespace Biigle\Http\Middleware
$ EncryptCookies#except — Property in class EncryptCookies: The names of the cookies that should not be encrypted.
$ PreventRequestsDuringMaintenance#except — Property in class PreventRequestsDuringMaintenance: The URIs that should be reachable while maintenance mode is enabled.
$ TrimStrings#except — Property in class TrimStrings: The names of the attributes that should not be trimmed.
$ UpdateUserActivity#except — Property in class UpdateUserActivity: The URIs that should be excluded from updating the user activity.
$ VerifyCsrfToken#except — Property in class VerifyCsrfToken: The URIs that should be excluded from CSRF verification.
Sort::execute() — Method in class Sort: Compute a color sort sequence.
$ StoreLargoSession#emptyRequest — Property in class StoreLargoSession: Specifies whether the request is empty.
DelphiApply::execute() — Method in class DelphiApply: Execute a new Delphi laser point detection.
DelphiGather::execute() — Method in class DelphiGather: Execute a new Delphi preprocessing.
Detect::execute() — Method in class Detect: Execute a new manual laser point detection.
LaserpointsScript::exec() — Method in class LaserpointsScript: Execute a laser point detection command.
ExportAreaController — Class in namespace Biigle\Modules\Reports\Http\Controllers\Api\Volumes
$ CsvFile#enclosure — Property in class CsvFile: String enclosure character.
$ CsvFile#escape_char — Property in class CsvFile: Escape character.
ExtendedReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Projects\ImageAnnotations
$ ProjectReportGenerator#extension — Property in class ProjectReportGenerator: File extension of the report file.
$ ReportGenerator#extension — Property in class ReportGenerator: File extension of the report file.
ReportGenerator::expandLabelName() — Method in class ReportGenerator: Constructs a label name from the names of all parent labels and the label itself.
$ IfdoReportGenerator#extension — Property in class IfdoReportGenerator: File extension of the report file.
$ AbundanceReportGenerator#extension — Property in class AbundanceReportGenerator: File extension of the report file.
$ AnnotationLocationReportGenerator#extension — Property in class AnnotationLocationReportGenerator: File extension of the report file.
AnnotationLocationReportGenerator::estimateAnnotationPosition() — Method in class AnnotationLocationReportGenerator: Estimate the position of an annotation in world coordinates.
$ AreaReportGenerator#extension — Property in class AreaReportGenerator: File extension of the report file.
$ BasicReportGenerator#extension — Property in class BasicReportGenerator: File extension of the report file.
$ CsvReportGenerator#extension — Property in class CsvReportGenerator: File extension of the report file.
ExtendedReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Volumes\ImageAnnotations
$ ExtendedReportGenerator#extension — Property in class ExtendedReportGenerator: File extension of the report file.
$ FullReportGenerator#extension — Property in class FullReportGenerator: File extension of the report file.
$ ImageLocationReportGenerator#extension — Property in class ImageLocationReportGenerator: File extension of the report file.
$ BasicReportGenerator#extension — Property in class BasicReportGenerator: File extension of the report file.
$ CsvReportGenerator#extension — Property in class CsvReportGenerator: File extension of the report file.
$ ImageLocationReportGenerator#extension — Property in class ImageLocationReportGenerator: File extension of the report file.
$ CsvReportGenerator#extension — Property in class CsvReportGenerator: File extension of the report file.
$ CsvReportGenerator#extension — Property in class CsvReportGenerator: File extension of the report file.
VolumeReportGenerator::expandLabelName() — Method in class VolumeReportGenerator: Constructs a label name from the names of all parent labels and the label itself.
VolumeReportGenerator::executeScript() — Method in class VolumeReportGenerator: Execute the external report parsing Python script.
ExportAdminController — Class in namespace Biigle\Modules\Sync\Http\Controllers\Views
Export — Class in namespace Biigle\Modules\Sync\Support\Export
Import::expectedFiles() — Method in class Import: The files expected by this import.
Import::expectKeysInJson() — Method in class Import: Validates a JSON file to contain an array of objects, each of which has all the expected keys.
Import::expectColumnsInCsv() — Method in class Import: Validates a CSV file to contain the expected columns.
LabelTreeImport::expectedFiles() — Method in class LabelTreeImport: The files expected by this import.
PublicLabelTreeImport::expectedFiles() — Method in class PublicLabelTreeImport: The files expected by this import.
UserImport::expectedFiles() — Method in class UserImport: The files expected by this import.
VolumeImport::expectedFiles() — Method in class VolumeImport: The files expected by this import.
ProjectPolicy::editIn() — Method in class ProjectPolicy: Determine if the user can edit things in the given project.
VolumePolicy::editIn() — Method in class VolumePolicy: Determine if the user can edit something in the given volume.
Project::editors() — Method in class Project: All members of this project with the editor role.
EventServiceProvider — Class in namespace Biigle\Providers
WormsAdapter::extractParents() — Method in class WormsAdapter: Extract the aphia IDs in correct ordering from a WoRMS classification hierarchy.

F

Annotation::file() — Method in class Annotation: The file, this annotation belongs to.
$ AnnotationLabel#fillable — Property in class AnnotationLabel: The attributes that are mass assignable.
$ UpdateVideoMetadata#ffprobe — Property in class UpdateVideoMetadata: The FFProbe video instance.
LabelSourceAdapterContract::find() — Method in class LabelSourceAdapterContract: Find a label in the label source.
FederatedSearchInstance — Class in namespace Biigle
$ FederatedSearchInstance#fillable — Property in class FederatedSearchInstance: The attributes that are mass assignable.
FederatedSearchModel — Class in namespace Biigle
File — Class in namespace Biigle\FileCache\Contracts
FileCache — Class in namespace Biigle\FileCache\Contracts
FileCache — Class in namespace Biigle\FileCache\Facades
FileCache::fake() — Method in class FileCache: Use testing instance.
FileCache — Class in namespace Biigle\FileCache: The file cache.
$ FileCache#files — Property in class FileCache: The Filesytem instance to use
FileCacheServiceProvider — Class in namespace Biigle\FileCache
FileCacheFake — Class in namespace Biigle\FileCache\Testing
ElementsAdapter::fileExists() — Method in class ElementsAdapter: {@inheritdoc}
ElementsAdapter::fileSize() — Method in class ElementsAdapter: {@inheritdoc}
ElementsAdapter::fetchVolumePaths() — Method in class ElementsAdapter
Controller::fuzzyRedirect() — Method in class Controller: Redirects to the _redirect URL, to a route or else back.
FederatedSearchIndexController — Class in namespace Biigle\Http\Controllers\Api
FederatedSearchInstanceController — Class in namespace Biigle\Http\Controllers\Api
LabelSourceController::find() — Method in class LabelSourceController: Find labels from a label source.
UserController::find() — Method in class UserController: Finds all users with firstnames or lastnames like $pattern.
FileLabelsController — Class in namespace Biigle\Http\Controllers\Api\Volumes
FilenamesController — Class in namespace Biigle\Http\Controllers\Api\Volumes
FileLabelController — Class in namespace Biigle\Http\Controllers\Api\Volumes\Filters
FileLabelUserController — Class in namespace Biigle\Http\Controllers\Api\Volumes\Filters
FilenameController — Class in namespace Biigle\Http\Controllers\Api\Volumes\Filters
ForgotPasswordController — Class in namespace Biigle\Http\Controllers\Auth
FederatedSearchController — Class in namespace Biigle\Http\Controllers\Views\Admin
$ DestroyVolumeFile#file — Property in class DestroyVolumeFile: The file that should be deleted.
$ LinkVideoAnnotation#firstAnnotation — Property in class LinkVideoAnnotation: The first annotation that should be linked.
$ StoreVolumeFileLabel#file — Property in class StoreVolumeFileLabel: The file to which the label should be attached.
ImageAnnotation::file() — Method in class ImageAnnotation: The file, this annotation belongs to.
ImageLabel::file() — Method in class ImageLabel: The file, this volume file label belongs to.
$ CreateNewImagesOrVideos#filenames — Property in class CreateNewImagesOrVideos: The filenames of the files to create.
ProcessNewImage::fracToFloat() — Method in class ProcessNewImage: Converts a fracture (string) like "1/2" to a float.
$ ProcessNewVideo#ffmpegVideo — Property in class ProcessNewVideo: The FFMpeg video instance.
ComputeNewSequence::failed() — Method in class ComputeNewSequence: Handle a job failure.
$ GenerateMissing#format — Property in class GenerateMissing: Largo patch storage file format.
FilterImageAnnotationsByLabelController — Class in namespace Biigle\Modules\Largo\Http\Controllers\Api\Projects
FilterVideoAnnotationsByLabelController — Class in namespace Biigle\Modules\Largo\Http\Controllers\Api\Projects
FilterImageAnnotationsByLabelController — Class in namespace Biigle\Modules\Largo\Http\Controllers\Api\Volumes
FilterVideoAnnotationsByLabelController — Class in namespace Biigle\Modules\Largo\Http\Controllers\Api\Volumes
$ StoreLargoSession#force — Property in class StoreLargoSession: The force request attribute.
$ ApplyLargoSession#force — Property in class ApplyLargoSession: Whether to dismiss labels even if they were created by other users.
DelphiGather::finish() — Method in class DelphiGather: Finish the Delphi preprocessing after all images have been processed.
FiltersInvalidLaserPoints — Class in namespace Biigle\Modules\Laserpoints\Traits
FiltersInvalidLaserPoints::filterInvalidLaserPoints() — Method in class FiltersInvalidLaserPoints: Removes items from the annotations array if the laser point annotations are invalid.
File — Class in namespace Biigle\Modules\Reports\Support
$ AbundanceReportGenerator#filename — Property in class AbundanceReportGenerator: Name of the report for use as (part of) a filename.
$ AnnotationLocationReportGenerator#filename — Property in class AnnotationLocationReportGenerator: Name of the report for use as (part of) a filename.
$ AreaReportGenerator#filename — Property in class AreaReportGenerator: Name of the report for use as (part of) a filename.
$ BasicReportGenerator#filename — Property in class BasicReportGenerator: Name of the report for use as (part of) a filename.
$ CsvReportGenerator#filename — Property in class CsvReportGenerator: Name of the report for use as (part of) a filename.
$ ExtendedReportGenerator#filename — Property in class ExtendedReportGenerator: Name of the report for use as (part of) a filename.
FullReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Projects\ImageAnnotations
$ FullReportGenerator#filename — Property in class FullReportGenerator: Name of the report for use as (part of) a filename.
$ ImageLocationReportGenerator#filename — Property in class ImageLocationReportGenerator: Name of the report for use as (part of) a filename.
$ ImageIfdoReportGenerator#filename — Property in class ImageIfdoReportGenerator: Name of the report for use as (part of) a filename.
$ BasicReportGenerator#filename — Property in class BasicReportGenerator: Name of the report for use as (part of) a filename.
$ CsvReportGenerator#filename — Property in class CsvReportGenerator: Name of the report for use as (part of) a filename.
$ ImageLocationReportGenerator#filename — Property in class ImageLocationReportGenerator: Name of the report for use as (part of) a filename.
$ CsvReportGenerator#filename — Property in class CsvReportGenerator: Name of the report for use as (part of) a filename.
$ VideoIfdoReportGenerator#filename — Property in class VideoIfdoReportGenerator: Name of the report for use as (part of) a filename.
$ CsvReportGenerator#filename — Property in class CsvReportGenerator: Name of the report for use as (part of) a filename.
$ ReportGenerator#filename — Property in class ReportGenerator: Name of the report for use as (part of) a filename.
$ AbundanceReportGenerator#filename — Property in class AbundanceReportGenerator: Name of the report for use as (part of) a filename.
$ AnnotationLocationReportGenerator#filename — Property in class AnnotationLocationReportGenerator: Name of the report for use as (part of) a filename.
$ AreaReportGenerator#filename — Property in class AreaReportGenerator: Name of the report for use as (part of) a filename.
$ BasicReportGenerator#filename — Property in class BasicReportGenerator: Name of the report for use as (part of) a filename.
$ CsvReportGenerator#filename — Property in class CsvReportGenerator: Name of the report for use as (part of) a filename.
$ ExtendedReportGenerator#filename — Property in class ExtendedReportGenerator: Name of the report for use as (part of) a filename.
FullReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Volumes\ImageAnnotations
$ FullReportGenerator#filename — Property in class FullReportGenerator: Name of the report for use as (part of) a filename.
$ ImageLocationReportGenerator#filename — Property in class ImageLocationReportGenerator: Name of the report for use as (part of) a filename.
$ ImageIfdoReportGenerator#filename — Property in class ImageIfdoReportGenerator: Name of the report for use as (part of) a filename.
$ BasicReportGenerator#filename — Property in class BasicReportGenerator: Name of the report for use as (part of) a filename.
$ CsvReportGenerator#filename — Property in class CsvReportGenerator: Name of the report for use as (part of) a filename.
$ ImageLocationReportGenerator#filename — Property in class ImageLocationReportGenerator: Name of the report for use as (part of) a filename.
$ CsvReportGenerator#filename — Property in class CsvReportGenerator: Name of the report for use as (part of) a filename.
$ VideoIfdoReportGenerator#filename — Property in class VideoIfdoReportGenerator: Name of the report for use as (part of) a filename.
$ CsvReportGenerator#filename — Property in class CsvReportGenerator: Name of the report for use as (part of) a filename.
Import::filesMatch() — Method in class Import: Check if this import matches to the given import files.
Import::files() — Method in class Import: Get the basename of each file of this import.
FederatedSearchInstancePolicy — Class in namespace Biigle\Policies
ProjectPolicy::forceEditIn() — Method in class ProjectPolicy: Determine if the user can edit things created by other users in the given project.
VolumePolicy::forceEditIn() — Method in class VolumePolicy: Determine if the user can edit things created by other users in the given volume.
Project::flushGeoInfoCache() — Method in class Project: Flush the cached information if this project has volumes which have images with GPS coordinates.
$ ImageMetadata#files — Property in class ImageMetadata: Array of volume file names.
$ VolumeFileUnique#files — Property in class VolumeFileUnique: The filenames that already exist.
WormsAdapter::find() — Method in class WormsAdapter: Find labels by scientific name.
WormsAdapter::filterUnaccepted() — Method in class WormsAdapter: Returns true for accepted WoRMS items and false otherwise.
$ SystemMessage#fillable — Property in class SystemMessage: The attributes that are mass assignable.
User::federatedSearchModels() — Method in class User: The federated search models that the user can access
$ Video#fillable — Property in class Video: The attributes that are mass assignable.
$ VideoAnnotation#fillable — Property in class VideoAnnotation: The attributes that are mass assignable.
VideoAnnotation::file() — Method in class VideoAnnotation: The file, this annotation belongs to.
VideoLabel::file() — Method in class VideoLabel: The file, this volume file label belongs to.
Volume::files() — Method in class Volume: The images or videos belonging to this volume.
Volume::flushThumbnailCache() — Method in class Volume: Flush the cache that stores the volume thumbnail.
Volume::flushGeoInfoCache() — Method in class Volume: Flush the cached information if this volume has images with GPS coordinates.
VolumeFileLabel::file() — Method in class VolumeFileLabel: The file, this volume file label belongs to.

G

Annotation::getFileIdAttribute() — Method in class Annotation: Get the file_id attribute
Annotation::getPoints() — Method in class Annotation: Get the points array of the annotation.
Annotation::getShape() — Method in class Annotation: Get the shape of an annotation.
Annotation::getFile() — Method in class Annotation: Get the image/video, the annotation belongs to.
AnnotationSession::getVolumeFileAnnotations() — Method in class AnnotationSession: Get the annotations of the file (with labels), filtered by the restrictions of this annotation session.
AnnotationSession::getStartsAtIso8601Attribute() — Method in class AnnotationSession: Get the start date formatted as ISO8601 string.
AnnotationSession::getEndsAtIso8601Attribute() — Method in class AnnotationSession: Get the end date formatted as ISO8601 string.
Annotation::getPoints() — Method in class Annotation: Get the points array of the annotation.
Annotation::getShape() — Method in class Annotation: Get the shape of an annotation.
Annotation::getFile() — Method in class Annotation: Get the image/video, the annotation belongs to.
Modules::getFacadeAccessor() — Method in class Modules: Get the registered name of the component.
VipsImage::getFacadeAccessor() — Method in class VipsImage: Get the registered name of the component.
FederatedSearchInstance::getRemoteTokenAttribute() — Method in class FederatedSearchInstance: Get the remote_token attribute.
FederatedSearchModel::getThumbnailUrlAttribute() — Method in class FederatedSearchModel: Get the model thumbnail url attribute.
FederatedSearchModel::getThumbnailUrlsAttribute() — Method in class FederatedSearchModel: Get the model thumbnail url attribute.
File::getUrl() — Method in class File: Get the file URL.
FileCache::get() — Method in class FileCache: Perform a callback with the path of a cached file. This takes care of shared locks on the cached file file so it is not corrupted due to concurrent write operations.
FileCache::getOnce() — Method in class FileCache: Like get but deletes the cached file afterwards (if it is not used somewhere else).
FileCache::getStream() — Method in class FileCache: Get a stream resource for an file. If the file is cached, the resource points to the cached file instead. This will not cache uncached files. Make sure to close the streams!
FileCache::getFacadeAccessor() — Method in class FileCache: Get the registered name of the component.
FileCache::get() — Method in class FileCache: Perform a callback with the path of a cached file. This takes care of shared locks on the cached file file so it is not corrupted due to concurrent write operations.
FileCache::getOnce() — Method in class FileCache: Like get but deletes the cached file afterwards (if it is not used somewhere else).
FileCache::getStream() — Method in class FileCache: Get a stream resource for an file. If the file is cached, the resource points to the cached file instead. This will not cache uncached files. Make sure to close the streams!
FileCache::getRemoteFile() — Method in class FileCache: Cache a remote file and get the path to the cached file.
FileCache::getDiskFile() — Method in class FileCache: Cache an file from a storage disk and get the path to the cached file. Files from local disks are not cached.
FileCache::getCachedPath() — Method in class FileCache: Get the path to the cached file file.
FileCache::getFileStream() — Method in class FileCache: Get the stream resource for an file.
FileCache::getDisk() — Method in class FileCache: Get the storage disk on which a file is stored.
GenericFile — Class in namespace Biigle\FileCache
GenericFile::getUrl() — Method in class GenericFile: Get the file URL.
FileCacheFake::get() — Method in class FileCacheFake: Perform a callback with the path of a cached file. This takes care of shared locks on the cached file file so it is not corrupted due to concurrent write operations.
FileCacheFake::getOnce() — Method in class FileCacheFake: Like get but deletes the cached file afterwards (if it is not used somewhere else).
FileCacheFake::getStream() — Method in class FileCacheFake: Get a stream resource for an file. If the file is cached, the resource points to the cached file instead. This will not cache uncached files. Make sure to close the streams!
ElementsAdapter::getMediaFile() — Method in class ElementsAdapter: Get the media file information.
ElementsAdapter::getMediaFiles() — Method in class ElementsAdapter: Get the media file information for all files of a given parent.
ElementsAdapter::getMediaFileDownload() — Method in class ElementsAdapter: Get the content of a media file.
ElementsAdapter::getFileMetadata() — Method in class ElementsAdapter
ElementsAdapter::getMetadata() — Method in class ElementsAdapter
ImageLabelController::getFileModel() — Method in class ImageLabelController: Get the file model class name.
ImageLabelController::getFileLabelModel() — Method in class ImageLabelController: Get the file label model class name.
VideoFileController::getByteRange() — Method in class VideoFileController: Determine the byte range that should be included in the response.
VideoLabelController::getFileModel() — Method in class VideoLabelController: Get the file model class name.
VideoLabelController::getFileLabelModel() — Method in class VideoLabelController: Get the file label model class name.
VolumeFileLabelController::getFileModel() — Method in class VolumeFileLabelController: Get the file model class name.
VolumeFileLabelController::getFileLabelModel() — Method in class VolumeFileLabelController: Get the file label model class name.
IndexController::get() — Method in class IndexController: Shows the admin dashboard.
UsersController::get() — Method in class UsersController: Shows the admin users page.
VolumeController::getProjects() — Method in class VolumeController: Get all projects that belong to a volume and that the user can access.
DestroyImage::getFileModel() — Method in class DestroyImage: Get the file model class name.
DestroyVideo::getFileModel() — Method in class DestroyVideo: Get the file model class name.
DestroyVolumeFile::getFileModel() — Method in class DestroyVolumeFile: Get the file model class name.
StoreImageLabel::getFileModel() — Method in class StoreImageLabel: Get the file model class;
StoreLabelTreeMerge::getFlatLabels() — Method in class StoreLabelTreeMerge: Returns a flat list of a nested array of labels and assigns a parent_index to each label, which indicates the position of the parent label in the list (as opposed to a parent_id, sinde the labels have no ID yet).
StoreVideoLabel::getFileModel() — Method in class StoreVideoLabel: Get the file model class;
StoreVolumeFileLabel::getFileModel() — Method in class StoreVolumeFileLabel: Get the file model class;
Image::getFile() — Method in class Image: Get the original image as download response.
Image::getTilingInProgressAttribute() — Method in class Image: Get the tilingInProgress attribute.
Image::getThumbnailUrlAttribute() — Method in class Image: URL to the thumbnail of this image.
ImageAnnotation::getFileIdAttribute() — Method in class ImageAnnotation: Get the file_id attribute
ImageLabel::getFileIdAttribute() — Method in class ImageLabel: Get the file ID attribute.
CreateNewImagesOrVideos::generateImageMetadataMap() — Method in class CreateNewImagesOrVideos: Generate a map for image metadata that is indexed by filename.
CreateNewImagesOrVideos::generateVideoMetadataMap() — Method in class CreateNewImagesOrVideos: Generate a map for video metadata that is indexed by filename.
GenerateFederatedSearchIndex — Class in namespace Biigle\Jobs
GenerateFederatedSearchIndex::generateLabelTreeIndex() — Method in class GenerateFederatedSearchIndex: Generate the label tree index.
GenerateFederatedSearchIndex::generateProjectIndex() — Method in class GenerateFederatedSearchIndex: Generate the project index.
GenerateFederatedSearchIndex::generateVolumeIndex() — Method in class GenerateFederatedSearchIndex: Generate the volume index.
ProcessNewImage::getExif() — Method in class ProcessNewImage: Get the exif information of an image if possible.
ProcessNewImage::getGps() — Method in class ProcessNewImage: Converts a EXIF GPS coordinate to a float see: http://stackoverflow.com/a/2572991/1796523.
ProcessNewVideo::getCodec() — Method in class ProcessNewVideo: Get the codec of a video
ProcessNewVideo::getVideoDuration() — Method in class ProcessNewVideo: Get the duration of the video.
ProcessNewVideo::getVideoDimensions() — Method in class ProcessNewVideo: Get the dimensions of a video
ProcessNewVideo::generateVideoThumbnail() — Method in class ProcessNewVideo: Generate a thumbnail from the video at the specified time.
ProcessNewVideo::getThumbnailTimes() — Method in class ProcessNewVideo: Get the times at which thumbnails should be sampled.
TileSingleImage::generateTiles() — Method in class TileSingleImage: Generate tiles for the image and put them to temporary storage.
TileSingleImage::getVipsImage() — Method in class TileSingleImage: Get the vips image instance.
TileSingleImage::getIterator() — Method in class TileSingleImage: Get the recursive directory iterator for the given path.
TrackObject::getTrackingKeyframes() — Method in class TrackObject: Execute the object tracking method and get the resulting annotation key frames.
TrackObject::getInputJsonPath() — Method in class TrackObject: Get the path to to input file for the object tracking script.
TrackObject::getOutputJsonPath() — Method in class TrackObject: Get the path to to output file for the object tracking script.
TrackObject::getStartWindow() — Method in class TrackObject: Get the coordinates and dimensions of the start window for the object tracking script.
TrackObject::getPointsFromKeyframe() — Method in class TrackObject: Get the points of a keyframe depending on the annotation shape.
UpdateFederatedSearchIndex::getValidator() — Method in class UpdateFederatedSearchIndex: Get the validator instance for the response.
LabelSource::getAdapter() — Method in class LabelSource: Returns the label source adapter of this label source.
LabelTree::getVersionedNameAttribute() — Method in class LabelTree: Get the name with a version suffix of this label tree.
CreateRedisLogger::getFallbackChannelName() — Method in class CreateRedisLogger: Get fallback log channel name.
LogManager::getLogFilenames() — Method in class LogManager: Get the filenames of the logfiles.
LogManager::getLogFileContent() — Method in class LogManager: Get the content of a logfile.
LogManager::getRedisLogMessages() — Method in class LogManager: Get the log messages.
LogManager::getRecentCount() — Method in class LogManager: Get the number of log messages of the last day(s).
LogManager::getFallbackChannelName() — Method in class LogManager: Get fallback log channel name.
AnnotationAssistanceRequest::generateToken() — Method in class AnnotationAssistanceRequest: Generate a token for use in the annotation assistance request URL.
AnnotationAssistanceRequest::getResponseLabelAttribute() — Method in class AnnotationAssistanceRequest: Get the chosen response label from the request labels array.
GeoServiceProvider — Class in namespace Biigle\Modules\Geo
GenerateMissing — Class in namespace Biigle\Modules\Largo\Console\Commands
StoreLargoSession::getAffectedAnnotations() — Method in class StoreLargoSession: Get a list of unique annotation IDs that are either dismissed or changed.
StoreLargoSession::getRequiredLabelTrees() — Method in class StoreLargoSession: Returns the IDs of all label trees that must be available to apply the changes.
StoreProjectLargoSession::getAffectedImageVolumes() — Method in class StoreProjectLargoSession: Get the IDs of the image volumes that are associated with the referenced image annotations.
StoreProjectLargoSession::getAffectedVideoVolumes() — Method in class StoreProjectLargoSession: Get the IDs of the video volumes that are associated with the referenced video annotations.
StoreVolumeLargoSession::getAvailableLabelTrees() — Method in class StoreVolumeLargoSession: Get label trees of projects that the requesting user and the volume have in common.
GenerateAnnotationPatch — Class in namespace Biigle\Modules\Largo\Jobs
GenerateAnnotationPatch::getTargetPath() — Method in class GenerateAnnotationPatch: Assemble the target path for an annotation patch.
GenerateAnnotationPatch::getPatchRect() — Method in class GenerateAnnotationPatch: Calculate the bounding rectangle of the patch to extract.
GenerateAnnotationPatch::getAnnotationPatch() — Method in class GenerateAnnotationPatch: Get the annotation patch as buffer.
GenerateImageAnnotationPatch — Class in namespace Biigle\Modules\Largo\Jobs
GenerateImageAnnotationPatch::getVipsImage() — Method in class GenerateImageAnnotationPatch: Get the vips image instance.
GenerateVideoAnnotationPatch — Class in namespace Biigle\Modules\Largo\Jobs
GenerateVideoAnnotationPatch::getVideo() — Method in class GenerateVideoAnnotationPatch: Get the FFMpeg video instance.
GenerateVideoAnnotationPatch::getVideoFrame() — Method in class GenerateVideoAnnotationPatch: Get a video frame from a specific time as VipsImage object.
AnnotationObserver::getSavedDispatch() — Method in class AnnotationObserver: Get the dispatched job on a saved event.
AnnotationObserver::getDeletingDispatch() — Method in class AnnotationObserver: Get the dispatched job on a deleting event.
ImageAnnotationObserver::getSavedDispatch() — Method in class ImageAnnotationObserver: Get the dispatched job on a saved event.
ImageAnnotationObserver::getDeletingDispatch() — Method in class ImageAnnotationObserver: Get the dispatched job on a deleting event.
VideoAnnotationObserver::getSavedDispatch() — Method in class VideoAnnotationObserver: Get the dispatched job on a saved event.
VideoAnnotationObserver::getDeletingDispatch() — Method in class VideoAnnotationObserver: Get the dispatched job on a deleting event.
Image::getLaserpointsAttribute() — Method in class Image: Return the dynamic attribute for the laser points information.
Image::getAreaAttribute() — Method in class Image: Get the area attribute from the laser point detection.
Image::getCountAttribute() — Method in class Image: Get the count attribute from the laser point detection.
Image::getMethodAttribute() — Method in class Image: Get the method attribute from the laser point detection.
Image::getDistanceAttribute() — Method in class Image: Get the distance attribute from the laser point detection.
Image::getPointsAttribute() — Method in class Image: Get the points attribute from the laser point detection.
Image::getErrorAttribute() — Method in class Image: Get the error attribute from the laser point detection.
Image::getMessageAttribute() — Method in class Image: Get the message attribute from the lase point detection.
Job::getLaserpointsForVolume() — Method in class Job: Collects all images of a volume that contain laser point annotations.
Job::gather() — Method in class Job: Perform the gather step.
$ ProcessDelphiJob#gatherFile — Property in class ProcessDelphiJob: Path to the output of the Delphi gather script.
ProcessImageManualJob::getLaserpointsForImage() — Method in class ProcessImageManualJob: Collects the laser point annotations of the given image.
DelphiGather::getOutputPath() — Method in class DelphiGather: Get the path to the temporary ouput file of the Delphi gather script.
StoreReport::getOptions() — Method in class StoreReport: Get the options for the new report.
StoreVolumeReport::getOptions() — Method in class StoreVolumeReport: Get the options for the new report.
GenerateReportJob — Class in namespace Biigle\Modules\Reports\Jobs
Report::getSourceNameAttribute() — Method in class Report: Get the source name dynamically if the source still exists.
Report::getReportGenerator() — Method in class Report: Get the report generator for this report;.
Report::generate() — Method in class Report: Generate the report file for this report.
Report::getSubjectAttribute() — Method in class Report: Get the subject for this report.
Report::getNameAttribute() — Method in class Report: Get the name for this report.
Report::getFilenameAttribute() — Method in class Report: Get the filename for this report.
Report::getUrl() — Method in class Report: Get the URL to download the report.
Report::getStorageFilename() — Method in class Report: Get the filename of the report in storage (not the filename for download).
File::getPath() — Method in class File: Returns the path to the file.
AnnotationLocationReportGenerator::getProjectSources() — Method in class AnnotationLocationReportGenerator: Get sources for the sub-reports that should be generated for this project.
AnnotationReportGenerator::getName() — Method in class AnnotationReportGenerator: Get the report name.
AnnotationReportGenerator::getFilename() — Method in class AnnotationReportGenerator: Get the filename.
ImageLocationReportGenerator::getProjectSources() — Method in class ImageLocationReportGenerator: Get sources for the sub-reports that should be generated for this project.
ImageIfdoReportGenerator::getProjectSources() — Method in class ImageIfdoReportGenerator: Get sources for the sub-reports that should be generated for this project.
ImageLocationReportGenerator::getProjectSources() — Method in class ImageLocationReportGenerator: Get sources for the sub-reports that should be generated for this project.
ProjectImageReportGenerator::getProjectSources() — Method in class ProjectImageReportGenerator: Get sources for the sub-reports that should be generated for this project.
ProjectReportGenerator::generateReport() — Method in class ProjectReportGenerator: Generate the report.
ProjectReportGenerator::getProjectSources() — Method in class ProjectReportGenerator: Get sources for the sub-reports that should be generated for this project.
ProjectReportGenerator::getReportGenerator() — Method in class ProjectReportGenerator: Get the report generator.
ProjectVideoReportGenerator::getProjectSources() — Method in class ProjectVideoReportGenerator: Get sources for the sub-reports that should be generated for this project.
CsvReportGenerator::getName() — Method in class CsvReportGenerator: Get the report name.
CsvReportGenerator::getFilename() — Method in class CsvReportGenerator: Get the filename.
VideoIfdoReportGenerator::getProjectSources() — Method in class VideoIfdoReportGenerator: Get sources for the sub-reports that should be generated for this project.
ReportGenerator::get() — Method in class ReportGenerator: Get the report generator for the given type.
ReportGenerator::generate() — Method in class ReportGenerator: Generate the report.
ReportGenerator::generateReport() — Method in class ReportGenerator: Internal function to generate the report.
ReportGenerator::getName() — Method in class ReportGenerator: Get the report name.
ReportGenerator::getFilename() — Method in class ReportGenerator: Get the report filename.
ReportGenerator::getFullFilename() — Method in class ReportGenerator: Get the filename with extension.
ReportGenerator::getSiblingLabels() — Method in class ReportGenerator: Get all labels that belong to the label tree of the given label.
ReportGenerator::getOnlyLabels() — Method in class ReportGenerator: Returns the array of label ids to which this report should be restricted.
IfdoReportGenerator::generateReport() — Method in class IfdoReportGenerator: Generate the report.
IfdoReportGenerator::getUsers() — Method in class IfdoReportGenerator: Get all users who annotated in the volume.
IfdoReportGenerator::getLabels() — Method in class IfdoReportGenerator: Get all labels that were used in the volume.
IfdoReportGenerator::getWormsUrn() — Method in class IfdoReportGenerator: Get the WoRMS URN for a label (if it has one).
IfdoReportGenerator::getGeometryName() — Method in class IfdoReportGenerator: Get an iFDO geometry name string for an annotation.
AbundanceReportGenerator::generateReport() — Method in class AbundanceReportGenerator: Generate the report.
AnnotationLocationReportGenerator::generateReport() — Method in class AnnotationLocationReportGenerator: Generate the report.
AnnotationReportGenerator::getName() — Method in class AnnotationReportGenerator: Get the report name.
AnnotationReportGenerator::getFilename() — Method in class AnnotationReportGenerator: Get the filename.
AreaReportGenerator::generateReport() — Method in class AreaReportGenerator: Generate the report.
BasicReportGenerator::generateReport() — Method in class BasicReportGenerator: Generate the report.
CsvReportGenerator::generateReport() — Method in class CsvReportGenerator: Generate the report.
ExtendedReportGenerator::generateReport() — Method in class ExtendedReportGenerator: Generate the report.
FullReportGenerator::generateReport() — Method in class FullReportGenerator: Generate the report.
FullReportGenerator::getArea() — Method in class FullReportGenerator: Parses the image attrs JSON object to retrieve the computed area of the laserpoint detection.
ImageLocationReportGenerator::generateReport() — Method in class ImageLocationReportGenerator: Generate the report.
ImageIfdoReportGenerator::getUsers() — Method in class ImageIfdoReportGenerator: Get all users who annotated in the volume.
ImageIfdoReportGenerator::getLabels() — Method in class ImageIfdoReportGenerator: Get all labels that were used in the volume.
BasicReportGenerator::generateReport() — Method in class BasicReportGenerator: Generate the report.
CsvReportGenerator::generateReport() — Method in class CsvReportGenerator: Generate the report.
ImageLocationReportGenerator::generateReport() — Method in class ImageLocationReportGenerator: Generate the report.
CsvReportGenerator::getName() — Method in class CsvReportGenerator: Get the report name.
CsvReportGenerator::getFilename() — Method in class CsvReportGenerator: Get the filename.
CsvReportGenerator::generateReport() — Method in class CsvReportGenerator: Generate the report.
VideoIfdoReportGenerator::getUsers() — Method in class VideoIfdoReportGenerator: Get all users who annotated in the volume.
VideoIfdoReportGenerator::getLabels() — Method in class VideoIfdoReportGenerator: Get all labels that were used in the volume.
CsvReportGenerator::generateReport() — Method in class CsvReportGenerator: Generate the report.
VolumeReportGenerator::getVolumeLabels() — Method in class VolumeReportGenerator: Get all labels that are attached to the volume of this report (through project label trees).
VolumeReportGenerator::getAnnotationSession() — Method in class VolumeReportGenerator: Returns the annotation session this report should be restricted to.
VolumeReportGenerator::getAnnotationSessionName() — Method in class VolumeReportGenerator: Get the name of the annotation session if it exists.
RestrictsToExportArea::getSkipIds() — Method in class RestrictsToExportArea: Returns the annotation IDs to skip as outside of the volume export area.
Volume::getExportAreaAttribute() — Method in class Volume: Return the dynamic attribute for the export area.
Uuids::generateOutput() — Method in class Uuids: Generate the output that can be used as file to synchronize user UUIDs.
Controller::getQuery() — Method in class Controller: Get the query for the model to export.
Controller::getExport() — Method in class Controller: Get the new export instance.
Controller::getExportFilename() — Method in class Controller: Get the filename of the export archive.
LabelTreeExportController::getQuery() — Method in class LabelTreeExportController: Get the query for the model to export.
LabelTreeExportController::getExport() — Method in class LabelTreeExportController: Get the new export instance.
LabelTreeExportController::getExportFilename() — Method in class LabelTreeExportController: Get the filename of the export archive.
UserExportController::getQuery() — Method in class UserExportController: Get the query for the model to export.
UserExportController::getExport() — Method in class UserExportController: Get the new export instance.
UserExportController::getExportFilename() — Method in class UserExportController: Get the filename of the export archive.
VolumeExportController::getQuery() — Method in class VolumeExportController: Get the query for the model to export.
VolumeExportController::getExport() — Method in class VolumeExportController: Get the new export instance.
VolumeExportController::getExportFilename() — Method in class VolumeExportController: Get the filename of the export archive.
Export::getArchive() — Method in class Export: Generate the export archive file and return the temporary file path.
Export::getContent() — Method in class Export: Get the content of the export file. If a string, it is the path to the temporary file containing the content (like a CSV).
Export::getFileName() — Method in class Export: Get the name of the export file.
Export::getAdditionalExports() — Method in class Export: Get additional exports that should be included in the export archive.
ImageAnnotationExport::getContent() — Method in class ImageAnnotationExport: Get the content of the export file. If a string, it is the path to the temporary file containing the content (like a CSV).
ImageAnnotationExport::getFileName() — Method in class ImageAnnotationExport: Get the name of the export file.
ImageAnnotationLabelExport::getContent() — Method in class ImageAnnotationLabelExport: Get the content of the export file. If a string, it is the path to the temporary file containing the content (like a CSV).
ImageAnnotationLabelExport::getFileName() — Method in class ImageAnnotationLabelExport: Get the name of the export file.
ImageExport::getContent() — Method in class ImageExport: Get the content of the export file. If a string, it is the path to the temporary file containing the content (like a CSV).
ImageExport::getFileName() — Method in class ImageExport: Get the name of the export file.
ImageLabelExport::getContent() — Method in class ImageLabelExport: Get the content of the export file. If a string, it is the path to the temporary file containing the content (like a CSV).
ImageLabelExport::getFileName() — Method in class ImageLabelExport: Get the name of the export file.
LabelTreeExport::getContent() — Method in class LabelTreeExport: Get the content of the export file. If a string, it is the path to the temporary file containing the content (like a CSV).
LabelTreeExport::getFileName() — Method in class LabelTreeExport: Get the name of the export file.
LabelTreeExport::getAdditionalExports() — Method in class LabelTreeExport: Get additional exports that should be included in the export archive.
PublicLabelExport::getContent() — Method in class PublicLabelExport: Get the content of the export file. If a string, it is the path to the temporary file containing the content (like a CSV).
PublicLabelExport::getFileName() — Method in class PublicLabelExport: Get the name of the export file.
PublicLabelTreeExport::getContent() — Method in class PublicLabelTreeExport: Get the content of the export file. If a string, it is the path to the temporary file containing the content (like a CSV).
PublicLabelTreeExport::getFileName() — Method in class PublicLabelTreeExport: Get the name of the export file.
PublicLabelTreeExport::getAdditionalExports() — Method in class PublicLabelTreeExport: Get additional exports that should be included in the export archive.
UserExport::getContent() — Method in class UserExport: Get the content of the export file. If a string, it is the path to the temporary file containing the content (like a CSV).
UserExport::getFileName() — Method in class UserExport: Get the name of the export file.
VideoAnnotationExport::getContent() — Method in class VideoAnnotationExport: Get the content of the export file. If a string, it is the path to the temporary file containing the content (like a CSV).
VideoAnnotationExport::getFileName() — Method in class VideoAnnotationExport: Get the name of the export file.
VideoAnnotationLabelExport::getContent() — Method in class VideoAnnotationLabelExport: Get the content of the export file. If a string, it is the path to the temporary file containing the content (like a CSV).
VideoAnnotationLabelExport::getFileName() — Method in class VideoAnnotationLabelExport: Get the name of the export file.
VideoExport::getContent() — Method in class VideoExport: Get the content of the export file. If a string, it is the path to the temporary file containing the content (like a CSV).
VideoExport::getFileName() — Method in class VideoExport: Get the name of the export file.
VideoLabelExport::getContent() — Method in class VideoLabelExport: Get the content of the export file. If a string, it is the path to the temporary file containing the content (like a CSV).
VideoLabelExport::getFileName() — Method in class VideoLabelExport: Get the name of the export file.
VolumeExport::getContent() — Method in class VolumeExport: Get the content of the export file. If a string, it is the path to the temporary file containing the content (like a CSV).
VolumeExport::getFileName() — Method in class VolumeExport: Get the name of the export file.
VolumeExport::getAdditionalExports() — Method in class VolumeExport: Get additional exports that should be included in the export archive.
VolumeExport::getLabelTreeIds() — Method in class VolumeExport: Get the label tree IDs that are associated with the volumes of this export.
VolumeExport::getUserIds() — Method in class VolumeExport: Get the user IDs that are associated with the volumes of this export.
ArchiveManager::get() — Method in class ArchiveManager: Get the correct import instance for the import with the given token.
ArchiveManager::generateToken() — Method in class ArchiveManager: Generates a new token for an import.
LabelTreeImport::getImportLabelTrees() — Method in class LabelTreeImport: Get the contents of the label tree import file.
LabelTreeImport::getLabelTreeImportCandidates() — Method in class LabelTreeImport: Get label trees that can be imported and don't already exist.
LabelTreeImport::getLabelImportCandidates() — Method in class LabelTreeImport: Get labels of existing label trees that can be imported.
LabelTreeImport::getUserImportCandidates() — Method in class LabelTreeImport: Get users who might be implicitly imported along with a label tree.
LabelTreeImport::getUserImport() — Method in class LabelTreeImport: Get the user import instance that belongs to this import.
LabelTreeImport::getInsertLabelTrees() — Method in class LabelTreeImport: Get the array that can be used to insert the label trees that should be imported.
LabelTreeImport::getInsertUserIds() — Method in class LabelTreeImport: Get IDs of label tree admins that should be imported.
LabelTreeImport::getInsertLabels() — Method in class LabelTreeImport: Get the array that can be used to insert the labels that should be imported.
PublicLabelTreeImport::getImportLabelTree() — Method in class PublicLabelTreeImport: Get the contents of the label tree import file.
UserImport::getImportUsers() — Method in class UserImport: Get the contents of the user import file.
UserImport::getUserImportCandidates() — Method in class UserImport: Get users that can be imported.
UserImport::getConflicts() — Method in class UserImport: Get import users whose email address matches with an existing user but the UUID doesn't.
VolumeImport::getImportVolumes() — Method in class VolumeImport: Get the contents of the volume import file.
VolumeImport::getImportLabelTrees() — Method in class VolumeImport: Get the contents of the label tree import file.
VolumeImport::getVolumeImportCandidates() — Method in class VolumeImport: Get all volumes of this import augmented by the IDs of the users, label trees and labels that they require.
VolumeImport::getLabelTreeImportCandidates() — Method in class VolumeImport: Get all label trees that might have to be imported for the volumes.
VolumeImport::getLabelImportCandidates() — Method in class VolumeImport: Get all labels that might have to be imported for the volumes.
VolumeImport::getUserImportCandidates() — Method in class VolumeImport: Get the users who might have to be imported for the volumes.
VolumeImport::getUserImport() — Method in class VolumeImport: Get the user import instance that belongs to this import.
VolumeImport::getLabelTreeImport() — Method in class VolumeImport: Get the label tree import instance that belongs to this import.
VolumeImport::getCsvIdMap() — Method in class VolumeImport: Get a map of one CSV ID column to another.
VolumeImport::getRequiredEntities() — Method in class VolumeImport: Get the list of labels and users that whould need to be imported for each volume.
RegistrationConfirmation::getDuplicateUsers() — Method in class RegistrationConfirmation: Determine possible duplicate users.
AnnotationPolicy::getFileModelTableName() — Method in class AnnotationPolicy: Get the file model table name of the annotation.
ProjectPolicy::getBaseQuery() — Method in class ProjectPolicy: Get the base query for all policy methods.
VolumePolicy::getBaseQuery() — Method in class VolumePolicy: Get the base query for all policy methods.
Project::guests() — Method in class Project: All members of this project with the guest role.
Project::getThumbnailUrlAttribute() — Method in class Project: URL to a unique thumbnail image for this project.
GreaterThan — Class in namespace Biigle\Rules
ApiGuard::getTokenForRequest() — Method in class ApiGuard: Get the token for the current request.
WormsAdapter::getSoapClient() — Method in class WormsAdapter: Get the SOAP client instance to use for requests.
Modules::getViewMixins() — Method in class Modules: Returns all mixins for a view that were registered by modules.
Modules::getMixins() — Method in class Modules
Modules::getControllerMixins() — Method in class Modules: Returns all mixins for a controller that were registered by modules.
Modules::getInstalledModules() — Method in class Modules: Returns information about all installed BIIGLE modules
Modules::getApidocPaths() — Method in class Modules: Get the registered apidoc paths of the modules.
HasJsonAttributes::getJsonAttr() — Method in class HasJsonAttributes: Get a dynamic JSON attribute.
User::getIsGlobalAdminAttribute() — Method in class User: Determines if the user has the global admin role.
User::getSettings() — Method in class User: Get settings of a specific key.
User::getSettingsAttribute() — Method in class User: Get the settings array.
User::getIsInSuperUserModeAttribute() — Method in class User: Determines if the user is currently in Super User Mode.
Video::getThumbnailAttribute() — Method in class Video: Thumbnail string of this video. Use with the thumbnail_url helper function.
Video::getThumbnailUrlAttribute() — Method in class Video: URL to the thumbnail of this video.
Video::getThumbnailsAttribute() — Method in class Video: Thumbnails array of this video. Use with the thumbnail_url helper function.
Video::getThumbnailsUrlAttribute() — Method in class Video: URLs to the thumbnails of this video.
Video::getErrorAttribute() — Method in class Video: Get the error attribute.
Video::getTakenAtAttribute() — Method in class Video: Get the taken_at timestamps.
VideoAnnotation::getFileIdAttribute() — Method in class VideoAnnotation: Get the file_id attribute
VideoAnnotation::getInterpolationPoints() — Method in class VideoAnnotation: Get the points of this annotation prepared for interpolation.
VideoLabel::getFileIdAttribute() — Method in class VideoLabel: Get the file ID attribute.
Volume::getActiveAnnotationSession() — Method in class Volume: Returns the active annotation session of this volume for the given user.
Volume::getThumbnailAttribute() — Method in class Volume: An image that can be used as unique thumbnail for this volume.
Volume::getThumbnailUrlAttribute() — Method in class Volume: URL to the thumbnail image of this volume.
Volume::getThumbnailsAttribute() — Method in class Volume: Several images or videos that can be used for the preview thumbnail of a volume.
Volume::getThumbnailsUrlAttribute() — Method in class Volume: URLs to the thumbnail images of this volume.
Volume::getCreatingAsyncAttribute() — Method in class Volume: Get the creating_async attribute of this volume.
Volume::getIfdo() — Method in class Volume: Get the content of the iFDO file associated with this volume.
Volume::getIfdoFilename() — Method in class Volume: Get the filename of the volume iFDO in storage.
Volume::getThumbnailsCacheKey() — Method in class Volume: Get the cache key for volume thumbnails.
Volume::getGeoInfoCacheKey() — Method in class Volume: Get the cache key for volume geo info.
Volume::getIfdoCacheKey() — Method in class Volume: Get the cache key for volume iFDO info.
VolumeFile::getUrlAttribute() — Method in class VolumeFile: Adds the url attribute to the model. The url is the absolute path to the original file.
VolumeFile::getUrl() — Method in class VolumeFile: Get the file URL.
VolumeFile::getMetadataAttribute() — Method in class VolumeFile: Get the metadata attribute.
VolumeFile::getWidthAttribute() — Method in class VolumeFile: Get the width attribute.
VolumeFile::getHeightAttribute() — Method in class VolumeFile: Get the height attribute.
VolumeFile::getSizeAttribute() — Method in class VolumeFile: Get the size attribute.
VolumeFile::getMimeTypeAttribute() — Method in class VolumeFile: Get the mimeType attribute.
VolumeFile::getThumbnailUrlAttribute() — Method in class VolumeFile: URL to the thumbnail of this file.
VolumeFileLabel::getFileIdAttribute() — Method in class VolumeFileLabel: Get the file ID attribute.

H

TrustHosts::hosts() — Method in class TrustHosts: Get the host patterns that should be trusted.
$ Annotation#hidden — Property in class Annotation: The attributes excluded from the model's JSON form.
$ ApiToken#hidden — Property in class ApiToken: The attributes excluded from the model's JSON form.
Apidoc::handle() — Method in class Apidoc: Handle the command.
MigrateTiledImages::handle() — Method in class MigrateTiledImages: Handle the command.
NewUser::handle() — Method in class NewUser: Handle the command.
PruneNotifications::handle() — Method in class PruneNotifications: Execute the console command.
UpdateImageMetadata::handle() — Method in class UpdateImageMetadata: Handle the command.
UpdateVideoMetadata::handle() — Method in class UpdateVideoMetadata: Handle the command.
UpdateVolumeUrls::handle() — Method in class UpdateVolumeUrls: Handle the command.
Handler — Class in namespace Biigle\Exceptions
$ FederatedSearchInstance#hidden — Property in class FederatedSearchInstance: The attributes excluded from the model's JSON form.
PruneFileCache::handle() — Method in class PruneFileCache: Execute the console command.
ClearFileCache::handle() — Method in class ClearFileCache: Handle the event.
MetadataController::hasMetadata() — Method in class MetadataController: Determine if a video has any metadata.
HeartbeatController — Class in namespace Biigle\Http\Controllers\Views
RedirectIfAuthenticated::handle() — Method in class RedirectIfAuthenticated: Handle an incoming request.
SessionOnly::handle() — Method in class SessionOnly: Handle an incoming request.
$ TrustProxies#headers — Property in class TrustProxies: The headers that should be used to detect proxies.
UpdateUserActivity::handle() — Method in class UpdateUserActivity: Handle an outgoing response.
$ Image#hidden — Property in class Image: The attributes hidden in the model's JSON form.
$ ImageAnnotationLabel#hidden — Property in class ImageAnnotationLabel: The attributes excluded from the model's JSON form.
CreateNewImagesOrVideos::handle() — Method in class CreateNewImagesOrVideos: Execute the job.
DeleteVolume::handle() — Method in class DeleteVolume: Execute the job.
GenerateFederatedSearchIndex::handle() — Method in class GenerateFederatedSearchIndex: Execute the job.
MigrateTiledImage::handle() — Method in class MigrateTiledImage: Execute the job.
$ ProcessNewImage#height — Property in class ProcessNewImage: The desired thumbnail height.
ProcessNewImage::handle() — Method in class ProcessNewImage: Execute the job.
ProcessNewImage::hasTakenAtInfo() — Method in class ProcessNewImage: Check if an exif array contains a creation date.
ProcessNewImage::hasGpsInfo() — Method in class ProcessNewImage: Check if an exif array contains GPS information.
ProcessNewImage::hasExtendedGpsInfo() — Method in class ProcessNewImage: Check if an exif array contains even more GPS information.
ProcessNewVideo::handle() — Method in class ProcessNewVideo: Execute the job.
ProcessNewVideo::handleFile() — Method in class ProcessNewVideo: Process a cached video file.
ProcessNewVolumeFiles::handle() — Method in class ProcessNewVolumeFiles: Execute the job.
TileSingleImage::handle() — Method in class TileSingleImage: Execute the job.
TrackObject::handle() — Method in class TrackObject: Execute the job.
UpdateFederatedSearchIndex::handle() — Method in class UpdateFederatedSearchIndex: Execute the job.
$ Label#hidden — Property in class Label: The attributes hidden from the model's JSON form.
$ LabelTree#hidden — Property in class LabelTree: The attributes hidden from the model's JSON form.
CleanupImageThumbnails::handle() — Method in class CleanupImageThumbnails: Handle the event.
CleanupImageTiles::handle() — Method in class CleanupImageTiles: Handle the event.
CleanupVideoThumbnails::handle() — Method in class CleanupVideoThumbnails: Handle the event.
Publish::handle() — Method in class Publish: Execute the command.
Publish::handle() — Method in class Publish: Execute the command.
ComputeNewSequence::handle() — Method in class ComputeNewSequence: Execute the job.
ImagesCreatedListener::handle() — Method in class ImagesCreatedListener: Handle the event.
Publish::handle() — Method in class Publish: Execute the command.
Config::handle() — Method in class Config: Execute the command.
GenerateMissing::handle() — Method in class GenerateMissing: Execute the command.
GenerateMissing::handleImageAnnotations() — Method in class GenerateMissing: Check image annnotation patches
GenerateMissing::handleVideoAnnotations() — Method in class GenerateMissing: Check video annnotation patches
MigratePatchStorage::handle() — Method in class MigratePatchStorage: Execute the command.
Publish::handle() — Method in class Publish: Execute the command.
ApplyLargoSession::handle() — Method in class ApplyLargoSession: Execute the job.
ApplyLargoSession::handleImageAnnotations() — Method in class ApplyLargoSession: Process the image annotations.
ApplyLargoSession::handleVideoAnnotations() — Method in class ApplyLargoSession: Process the video annotations.
GenerateAnnotationPatch::handle() — Method in class GenerateAnnotationPatch: Execute the job.
GenerateAnnotationPatch::handleFile() — Method in class GenerateAnnotationPatch: Handle a single file.
GenerateImageAnnotationPatch::handleFile() — Method in class GenerateImageAnnotationPatch: Handle a single image.
GenerateVideoAnnotationPatch::handleFile() — Method in class GenerateVideoAnnotationPatch: Handle a single image.
RemoveAnnotationPatches::handle() — Method in class RemoveAnnotationPatches: Execute the job.
ImagesCleanupListener::handle() — Method in class ImagesCleanupListener: Handle the event.
VideosCleanupListener::handle() — Method in class VideosCleanupListener: Handle the event.
Config::handle() — Method in class Config: Execute the command.
Publish::handle() — Method in class Publish: Execute the command.
Job::handle() — Method in class Job: Execute the job.
ProcessDelphiJob::handle() — Method in class ProcessDelphiJob: Execute the job.
ProcessImageDelphiJob::handle() — Method in class ProcessImageDelphiJob: Execute the job.
ProcessImageManualJob::handle() — Method in class ProcessImageManualJob: Execute the job.
ProcessManualJob::handle() — Method in class ProcessManualJob: Execute the job.
ProcessVolumeDelphiJob::handle() — Method in class ProcessVolumeDelphiJob: Execute the job.
Volume::hasDetectedLaserpoints() — Method in class Volume: Determines whether there are images with automatically detected laser points in this volume.
Publish::handle() — Method in class Publish: Execute the command.
GenerateReportJob::handle() — Method in class GenerateReportJob: Execute the job.
$ File#handle — Property in class File: File handle.
Prune::handle() — Method in class Prune: Execute the command.
Publish::handle() — Method in class Publish: Execute the command.
Uuids::handle() — Method in class Uuids: Execute the command.
Uuids::handleSync() — Method in class Uuids: Read the input file and perform interactive synchronization of user UUIDs.
ImportAdminController::hideUserCredentials() — Method in class ImportAdminController: Hides sensitive user credentials that should not be returned to the frontend.
PostprocessVolumeImport::handle() — Method in class PostprocessVolumeImport: Execute the job.
ArchiveManager::has() — Method in class ArchiveManager: Determine if the files of an import with tthe given token exist.
$ Project#hidden — Property in class Project: The attributes hidden from the model's JSON form.
Project::hasGeoInfo() — Method in class Project: Check if the project has volumes which have some images with GPS coordinates.
Handle — Class in namespace Biigle\Rules
HasConstantInstances — Class in namespace Biigle\Traits: Some models have fixed, "constant" instances. An example is the Role model, which may have e.g. the roles "admin" and "user". These are always the same and do not change.
HasJsonAttributes — Class in namespace Biigle\Traits
HasPointsAttribute — Class in namespace Biigle\Traits
$ User#hidden — Property in class User: The attributes hidden from the model's JSON form.
$ Video#hidden — Property in class Video: The attributes hidden from the model's JSON form.
Video::hasBeenProcessed() — Method in class Video: Determine whether the (new) video has been processed.
$ Volume#hidden — Property in class Volume: The attributes hidden from the model's JSON form.
Volume::hasConflictingAnnotationSession() — Method in class Volume: Check if the given annotation session is in conflict with existing ones.
Volume::hasGeoInfo() — Method in class Volume: Check if the volume has some images with GPS coordinates.
Volume::hasTiledImages() — Method in class Volume: Check if the there are tiled images in this volume.
Volume::hasIfdo() — Method in class Volume: Check if an iFDO metadata file is available for this volume.

I

AnnotationSession::imageAnnotations() — Method in class AnnotationSession: Get a query for all image annotations that belong to this session.
ImagesDeleted — Class in namespace Biigle\Events
FederatedSearchModel::instance() — Method in class FederatedSearchModel: The instance, this model belongs to.
FileCache::isRemote() — Method in class FileCache: Determine if an file is remote, i.e. served by a public webserver.
AnnotationController::index() — Method in class AnnotationController: List the IDs of files having one or more annotations.
AnnotationUserController::index() — Method in class AnnotationUserController: List the IDs of images having one or more annotations of the specified user.
VolumeAnnotationLabelController::index() — Method in class VolumeAnnotationLabelController: Get all annotation labels that were used in a volume.
VolumeImageAreaController::index() — Method in class VolumeImageAreaController: Get the area of the images of a volume in m².
ApiTokenController::index() — Method in class ApiTokenController: Shows a list of all API tokens belonging to the authenticated user.
FederatedSearchIndexController::index() — Method in class FederatedSearchIndexController: Show the federated search index.
ImageAnnotationBulkController — Class in namespace Biigle\Http\Controllers\Api
ImageAnnotationController — Class in namespace Biigle\Http\Controllers\Api
ImageAnnotationController::index() — Method in class ImageAnnotationController: Shows a list of all annotations of the specified image.
ImageAnnotationLabelController — Class in namespace Biigle\Http\Controllers\Api
ImageAnnotationLabelController::index() — Method in class ImageAnnotationLabelController: Shows all labels of the specified annotation.
ImageController — Class in namespace Biigle\Http\Controllers\Api
ImageLabelController — Class in namespace Biigle\Http\Controllers\Api
LabelTreeController::index() — Method in class LabelTreeController: Shows all label trees the user has access to.
MediaTypeController::index() — Method in class MediaTypeController: Shows all media types.
ProjectController::index() — Method in class ProjectController: Shows all projects that are accessible by the requesting user.
ProjectLabelTreeController::index() — Method in class ProjectLabelTreeController: Display all label trees used by the specified project.
ProjectUserController::index() — Method in class ProjectUserController: Displays the users belonging to the specified project.
ProjectVolumeController::index() — Method in class ProjectVolumeController: Shows a list of all volumes belonging to the specified project.
ProjectsAttachableVolumesController::index() — Method in class ProjectsAttachableVolumesController: Shows all volumes that can be attached to the project by the requesting user.
RoleController::index() — Method in class RoleController: Shows all roles.
ShapeController::index() — Method in class ShapeController: Shows all shapes.
UserController::index() — Method in class UserController: Shows a list of all users.
UserPinnedProjectController::index() — Method in class UserPinnedProjectController: Shows all pinned projects of the user.
UserRegistrationController::isAdminConfirmationEnabled() — Method in class UserRegistrationController: Determines if the user registration confirmation by admins is enabled.
VideoAnnotationController::index() — Method in class VideoAnnotationController: Shows a list of all annotations of the specified video.
VisibilityController::index() — Method in class VisibilityController: Shows all visibilities.
VolumeAnnotationSessionController::index() — Method in class VolumeAnnotationSessionController: Shows a list of all annotation sessions of the specified volume.
VolumeController::index() — Method in class VolumeController: Shows all volumes the user has access to.
VolumeFileController::index() — Method in class VolumeFileController: List the image/video IDs of the specified volume.
VolumeFileLabelController::index() — Method in class VolumeFileLabelController: Shows all labels of the specified file.
BrowserController::indexDirectories() — Method in class BrowserController: List directories in a storage disk.
BrowserController::indexImages() — Method in class BrowserController: List images in a storage disk.
BrowserController::indexVideos() — Method in class BrowserController: List videos in a storage disk.
BrowserController::indexFiles() — Method in class BrowserController: List files filtered by a regex in a storage disk.
FileLabelsController::index() — Method in class FileLabelsController: Get the labels for each image/video
FilenamesController::index() — Method in class FilenamesController: Get all filenames of a volume.
AnnotationLabelController::index() — Method in class AnnotationLabelController: List the IDs of files having one or more annotations with the specified label.
AnyFileLabelController::index() — Method in class AnyFileLabelController: List the IDs of images/videos having one or more labels attached.
FileLabelController::index() — Method in class FileLabelController: List the IDs of images/videos having the specified label attached.
FileLabelUserController::index() — Method in class FileLabelUserController: List the IDs of images/videos having one or more labels attached by the specified user.
FilenameController::index() — Method in class FilenameController: List the IDs of files with a filename matching the given pattern.
IfdoController — Class in namespace Biigle\Http\Controllers\Api\Volumes
UsedFileLabelsController::index() — Method in class UsedFileLabelsController: Get all file labels that were used in a volume.
UserController::index() — Method in class UserController: List the users of a volume.
RegisterController::isRegistrationDisabled() — Method in class RegisterController: Determines if the user registration mechansim is disabled.
RegisterController::isAdminConfirmationEnabled() — Method in class RegisterController: Determines if the user registration confirmation by admins is enabled.
Controller::isAutomatedRequest() — Method in class Controller: Determines if the request was done by an automated script (with API token or ajax).
FederatedSearchController::index() — Method in class FederatedSearchController: Show the federated search admin page.
IndexController — Class in namespace Biigle\Http\Controllers\Views\Admin
LabelTreesController::index() — Method in class LabelTreesController: Show the label tree admin page.
LogsController::index() — Method in class LogsController: Shows the available logfiles.
SystemMessagesController::index() — Method in class SystemMessagesController: Shows the admin system messages page.
ImageAnnotationController — Class in namespace Biigle\Http\Controllers\Views\Annotations
DashboardController::index() — Method in class DashboardController: Show the application dashboard to the user.
DashboardController::indexDashboard() — Method in class DashboardController: Show the dashboard for a logged in user.
DashboardController::indexLandingPage() — Method in class DashboardController: Show the landing page if no user is authenticated.
ImprintController — Class in namespace Biigle\Http\Controllers\Views
LabelTreeMergeController::index() — Method in class LabelTreeMergeController: Show the label tree merge index page.
LabelTreesController::index() — Method in class LabelTreesController: Show the label tree list.
ManualController::index() — Method in class ManualController: Show the application manual to the user.
NotificationsController::index() — Method in class NotificationsController: Shows the notification center.
ProjectsController::index() — Method in class ProjectsController: Shows the project index page.
SearchController::index() — Method in class SearchController: Shows the search page.
SettingsController::index() — Method in class SettingsController: Redirects to the profile settings.
SystemMessagesController::index() — Method in class SystemMessagesController: Shows the system message list.
ImageController — Class in namespace Biigle\Http\Controllers\Views\Volumes
ImageController::index() — Method in class ImageController: Shows the image index page.
VolumeController::index() — Method in class VolumeController: Shows the volume index page.
UpdateUserActivity::inExceptArray() — Method in class UpdateUserActivity: Determine if the request has a URI that should not update the user activity.
$ StoreImageAnnotation#image — Property in class StoreImageAnnotation: The image on which the annotation should be created.
$ StoreImageAnnotations#imageIds — Property in class StoreImageAnnotations: Unique image IDs of this request.
$ StoreImageAnnotations#images — Property in class StoreImageAnnotations: The images on which the annotations should be created.
$ StoreLabelTreeUser#isGlobalGuest — Property in class StoreLabelTreeUser: Determines whether the user to be attached is a global guest.
$ UpdateFederatedSearchInstance#instance — Property in class UpdateFederatedSearchInstance: The instance that should be updated.
$ UpdateLabelTreeUser#isGlobalGuest — Property in class UpdateLabelTreeUser: Determines whether the user to be attached is a global guest.
Image — Class in namespace Biigle: This model stores information on an image file in the file system.
ImageAnnotation — Class in namespace Biigle: An image annotation is a region of an image that can be labeled by the users.
ImageAnnotation::image() — Method in class ImageAnnotation: The image, this annotation belongs to.
ImageAnnotationLabel — Class in namespace Biigle: Pivot object for the connection between ImageAnnotation and Label.
ImageLabel — Class in namespace Biigle
ImageLabel::image() — Method in class ImageLabel: The image, this image label belongs to.
$ ProcessNewImage#image — Property in class ProcessNewImage: The image to process
$ TileSingleImage#image — Property in class TileSingleImage: The image to generate tiles for.
$ UpdateFederatedSearchIndex#instance — Property in class UpdateFederatedSearchIndex: The instance from which the index should be updated.
Label::isUsed() — Method in class Label: Determines if the label is used anywhere (e.g. attached to an annotation).
LogManager::isFile() — Method in class LogManager: Determine whether logs are written to files.
LogManager::isRedis() — Method in class LogManager: Determine whether logs are written to files.
ImageController — Class in namespace Biigle\Modules\Ananas\Http\Controllers\Api
AnnotationAssistanceRequestController::index() — Method in class AnnotationAssistanceRequestController: Show the list of all assistance requests of the user.
StoreAnnotationAssistanceRequest::invalidLabels() — Method in class StoreAnnotationAssistanceRequest: Check if the user attempts to use invalid labels for the request.
VolumeColorSortSequenceController::index() — Method in class VolumeColorSortSequenceController: List all color sort sequence colors of the specified volume.
ImagesCreatedListener — Class in namespace Biigle\Modules\ColorSort\Listeners
ImageObserver — Class in namespace Biigle\Modules\ColorSort\Observers
ProjectImageAnnotationLabelController::index() — Method in class ProjectImageAnnotationLabelController: List the IDs of images of a project having one or more annotations with the specified label.
ImageAnnotationsController — Class in namespace Biigle\Modules\Largo\Http\Controllers\Api\Labels
ImageAnnotationsController::index() — Method in class ImageAnnotationsController: Show image annotations of a label.
VideoAnnotationsController::index() — Method in class VideoAnnotationsController: Show video annotations of a label.
FilterImageAnnotationsByLabelController::index() — Method in class FilterImageAnnotationsByLabelController: Show all image annotations of the project that have a specific label attached.
FilterVideoAnnotationsByLabelController::index() — Method in class FilterVideoAnnotationsByLabelController: Show all video annotations of the project that have a specific label attached.
FilterImageAnnotationsByLabelController::index() — Method in class FilterImageAnnotationsByLabelController: Show all image annotations of the volume that have a specific label attached.
FilterVideoAnnotationsByLabelController::index() — Method in class FilterVideoAnnotationsByLabelController: Show all video annotations of the volume that have a specific label attached.
ImageAnnotationExamplesController — Class in namespace Biigle\Modules\Largo\Http\Controllers\Api\Volumes
ImageAnnotationExamplesController::index() — Method in class ImageAnnotationExamplesController: Show example image annotations of a label or of a similar label if no annotation exists.
LargoController::index() — Method in class LargoController: Show the Largo view for a project.
LargoController::index() — Method in class LargoController: Show the the Largo view for a volume.
StoreLargoSession::imageAnotationsBelongToVolumes() — Method in class StoreLargoSession: Check if all given image annotations belong to the given volumes.
$ ApplyLargoSession#id — Property in class ApplyLargoSession: The job ID.
ApplyLargoSession::ignoreDeletedLabels() — Method in class ApplyLargoSession: Removes changes to annotations that should get a new label which no longer exists.
ImagesCleanupListener — Class in namespace Biigle\Modules\Largo\Listeners
ImageAnnotationObserver — Class in namespace Biigle\Modules\Largo\Observers
ImagesController — Class in namespace Biigle\Modules\Laserpoints\Http\Controllers\Api
VolumeImageController::index() — Method in class VolumeImageController: List the IDs of images having automatically detected laser points.
$ ComputeImage#image — Property in class ComputeImage: The image that should be processed with laser point detection.
Image — Class in namespace Biigle\Modules\Laserpoints: Extends the base Biigle image.
$ Image#infoParams — Property in class Image: Properties of the laser points object.
$ ProcessDelphiJob#image — Property in class ProcessDelphiJob: The image to process.
$ ProcessImageDelphiJob#image — Property in class ProcessImageDelphiJob: The image to compute the area for.
$ ProcessImageManualJob#image — Property in class ProcessImageManualJob: The image to compute the area for.
$ ProcessManualJob#image — Property in class ProcessManualJob: The image to process.
SearchControllerMixin::index() — Method in class SearchControllerMixin: Add report results to the search view.
ReportsController::index() — Method in class ReportsController: Show the reports list of the user.
StoreReport::isType() — Method in class StoreReport: Check if the requested reporty type ID is in the supplied array.
StoreReport::isAllowedForExportArea() — Method in class StoreReport: Check if export_area may be configured for the requested report type.
StoreReport::isAllowedForAggregateChildLabels() — Method in class StoreReport: Check if aggregate_child_labels may be configured for the requested report type.
StoreReport::isAllowedForStripIfdo() — Method in class StoreReport: Check if strip_ifdo may be configured for the requested report type.
AnnotationReportGenerator::isRestrictedToExportArea() — Method in class AnnotationReportGenerator: Should this report be restricted to the export area?
ImageLocationReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Projects\ImageAnnotations
ImageIfdoReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Projects
ImageLocationReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Projects\ImageLabels
ProjectReportGenerator::isRestrictedToNewestLabel() — Method in class ProjectReportGenerator: Determines if this report should take only the newest label for each annotation.
CsvReportGenerator::isRestrictedToNewestLabel() — Method in class CsvReportGenerator: Determines if this report should take only the newest label for each annotation.
ReportGenerator::isRestrictedToLabels() — Method in class ReportGenerator: Determines if this report is restricted to a subset of labels.
IfdoReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Volumes
$ IfdoReportGenerator#imageAnnotationLabels — Property in class IfdoReportGenerator: All labels that should be contained in the iFDO.
$ IfdoReportGenerator#imageAnnotationCreators — Property in class IfdoReportGenerator: All users that should be contained in the iFDO.
$ IfdoReportGenerator#imageSetItems — Property in class IfdoReportGenerator: iFDO image-annotation arrays for each image of the volume.
IfdoReportGenerator::isArrayItem() — Method in class IfdoReportGenerator: Determine if an iFDO item is a single object or an array of objects.
AnnotationReportGenerator::initQuery() — Method in class AnnotationReportGenerator: Assembles the part of the DB query that is the same for all annotation reports.
$ AreaReportGenerator#images — Property in class AreaReportGenerator: All images that contain annotations which are included in this report.
ImageLocationReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Volumes\ImageAnnotations
ImageIfdoReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Volumes
ImageLocationReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Volumes\ImageLabels
CsvReportGenerator::initQuery() — Method in class CsvReportGenerator: Assembles the part of the DB query that is the same for all annotation reports.
VolumeReportGenerator::isRestrictedToAnnotationSession() — Method in class VolumeReportGenerator: Should this report be restricted an annotation session?
VolumeReportGenerator::isRestrictedToNewestLabel() — Method in class VolumeReportGenerator: Determines if this report should take only the newest label of each annotation.
RestrictsToExportArea::isRestrictedToExportArea() — Method in class RestrictsToExportArea: Should this report be restricted to the export area?
Controller::isAllowed() — Method in class Controller: Determine if this kind of export is allowed by the config.
LabelTreeExportController::isAllowed() — Method in class LabelTreeExportController: Determine if this kind of export is allowed by the config.
UserExportController::isAllowed() — Method in class UserExportController: Determine if this kind of export is allowed by the config.
VolumeExportController::isAllowed() — Method in class VolumeExportController: Determine if this kind of export is allowed by the config.
ImportController — Class in namespace Biigle\Modules\Sync\Http\Controllers\Api\Import
ExportAdminController::index() — Method in class ExportAdminController: Shows the export admin page.
ImportAdminController — Class in namespace Biigle\Modules\Sync\Http\Controllers\Views
ImportAdminController::index() — Method in class ImportAdminController: Shows the import admin page.
PublicLabelTreeImportController::index() — Method in class PublicLabelTreeImportController: Shows the import admin page.
$ PostprocessVolumeImport#ids — Property in class PostprocessVolumeImport: IDs of the imported volumes.
$ Export#ids — Property in class Export: IDs of the models of this export.
ImageAnnotationExport — Class in namespace Biigle\Modules\Sync\Support\Export
ImageAnnotationLabelExport — Class in namespace Biigle\Modules\Sync\Support\Export
ImageExport — Class in namespace Biigle\Modules\Sync\Support\Export
ImageLabelExport — Class in namespace Biigle\Modules\Sync\Support\Export
$ ArchiveManager#importTypes — Property in class ArchiveManager: Class names of available imports.
Import — Class in namespace Biigle\Modules\Sync\Support\Import
$ LabelTreeImport#importLabelTrees — Property in class LabelTreeImport: Caches the decoded label tree import file.
LabelTreeImport::insertLabelTrees() — Method in class LabelTreeImport: Insert label trees that should be imported in the database.
LabelTreeImport::insertLabelTreeVersions() — Method in class LabelTreeImport: Create label tree versions for imported versioned label trees.
LabelTreeImport::insertLabels() — Method in class LabelTreeImport: Insert labels that should be imported in the database.
$ PublicLabelTreeImport#importLabelTree — Property in class PublicLabelTreeImport: Caches the decoded label tree import file.
PublicLabelTreeImport::importLabels() — Method in class PublicLabelTreeImport: Import the labels of this import.
$ UserImport#importUsers — Property in class UserImport: Caches the decoded user import file.
$ VolumeImport#importVolumes — Property in class VolumeImport: Caches the decoded volume import file.
VolumeImport::insertVolumes() — Method in class VolumeImport: Insert import volumes into the database.
VolumeImport::insertUsers() — Method in class VolumeImport: Insert import users into the database.
VolumeImport::insertLabelTreesAndLabels() — Method in class VolumeImport: Insert import label trees and labels into the database.
VolumeImport::insertFiles() — Method in class VolumeImport: Insert import files into the database.
VolumeImport::insertImages() — Method in class VolumeImport: Insert import images into the database.
VolumeImport::insertVideos() — Method in class VolumeImport: Insert import videos into the database.
VolumeImport::insertImageLabels() — Method in class VolumeImport: Insert import image labels into the database.
VolumeImport::insertVideoLabels() — Method in class VolumeImport: Insert import video labels into the database.
VolumeImport::insertImageAnnotations() — Method in class VolumeImport: Insert import image annotations into the database.
VolumeImport::insertVideoAnnotations() — Method in class VolumeImport: Insert import video annotations into the database.
InAppNotification — Class in namespace Biigle\Notifications: A notification that is displayed through the in-app notification system.
ImageObserver — Class in namespace Biigle\Observers
UserPolicy::index() — Method in class UserPolicy: Determine if the given user can see other users.
Project::imageVolumes() — Method in class Project: The image volumes of this project.
ImageMetadata — Class in namespace Biigle\Rules
VolumeUrl::isDeniedProvider() — Method in class VolumeUrl: Determine if the new remote volume URL is from a denied provider.
SystemMessage::isPublished() — Method in class SystemMessage: Returns whether this system message is published.
ChecksMetadataStrings::isFilledString() — Method in class ChecksMetadataStrings: Determine if a value is not null and not an empty string.
$ ParsesMetadata#ifdoFieldMap — Property in class ParsesMetadata: Maps iFDO field names to BIIGLE metadata CSV fields.
ParsesMetadata::isValidHandle() — Method in class ParsesMetadata: Determine if a value is a valid handle.
VideoAnnotation::interpolatePoints() — Method in class VideoAnnotation: Get the interpolated points at a specific point of time.
VideoAnnotation::interpolateBetweenFrames() — Method in class VideoAnnotation: Get the interpolated points of this annotation between the specified frames.
VideoAnnotation::interpolateNaive() — Method in class VideoAnnotation: Interpolate between two points arrays.
VideoAnnotation::interpolationPointsToRectangle() — Method in class VideoAnnotation: Convert points that can be interpolated back to the points of a rectangle (frame).
Volume::images() — Method in class Volume: The images belonging to this volume.
Volume::isRemote() — Method in class Volume: Check if the images of this volume come from a remote URL.
Volume::isImageVolume() — Method in class Volume: Specifies whether the volume is an image volume.
Volume::isVideoVolume() — Method in class Volume: Specifies whether the volume is a video volume.

J

Job — Class in namespace Biigle\Jobs
Job — Class in namespace Biigle\Modules\Laserpoints\Jobs

K

Kernel — Class in namespace Biigle\Console
Kernel — Class in namespace Biigle\Http

L

Annotation::labels() — Method in class Annotation: The labels, this annotation got assigned by the users.
AnnotationLabel::label() — Method in class AnnotationLabel: The label, this annotation label belongs to.
LabelSourceAdapterContract — Class in namespace Biigle\Contracts: A label source adapter.
ElementsAdapter::lastModified() — Method in class ElementsAdapter: {@inheritdoc}
ElementsAdapter::listContents() — Method in class ElementsAdapter: {@inheritdoc}
LabelController — Class in namespace Biigle\Http\Controllers\Api
LabelSourceController — Class in namespace Biigle\Http\Controllers\Api
LabelTreeAuthorizedProjectController — Class in namespace Biigle\Http\Controllers\Api
LabelTreeController — Class in namespace Biigle\Http\Controllers\Api
LabelTreeLabelController — Class in namespace Biigle\Http\Controllers\Api
LabelTreeMergeController — Class in namespace Biigle\Http\Controllers\Api
LabelTreeUserController — Class in namespace Biigle\Http\Controllers\Api
LabelTreeVersionController — Class in namespace Biigle\Http\Controllers\Api
LinkVideoAnnotationController — Class in namespace Biigle\Http\Controllers\Api
LoginController — Class in namespace Biigle\Http\Controllers\Auth
LabelTreesController — Class in namespace Biigle\Http\Controllers\Views\Admin
LogsController — Class in namespace Biigle\Http\Controllers\Views\Admin
LabelTreeMembersController — Class in namespace Biigle\Http\Controllers\Views\LabelTrees
LabelTreeMergeController — Class in namespace Biigle\Http\Controllers\Views\LabelTrees
LabelTreeProjectsController — Class in namespace Biigle\Http\Controllers\Views\LabelTrees
LabelTreeVersionsController — Class in namespace Biigle\Http\Controllers\Views\LabelTrees
LabelTreesController — Class in namespace Biigle\Http\Controllers\Views\LabelTrees
$ DestroyLabel#label — Property in class DestroyLabel: The label to destroy.
LinkVideoAnnotation — Class in namespace Biigle\Http\Requests
$ StoreImageAnnotationLabel#label — Property in class StoreImageAnnotationLabel: The label that should be attached.
$ StoreImageAnnotations#labels — Property in class StoreImageAnnotations: The labels that should be attached to the new annotations.
$ StoreVideoAnnotationLabel#label — Property in class StoreVideoAnnotationLabel: The label that should be attached.
$ StoreVolumeFileLabel#label — Property in class StoreVolumeFileLabel: The label that should be attached to the file.
$ UpdateLabel#label — Property in class UpdateLabel: The label to update.
Image::labels() — Method in class Image: The labels, this image got attached by the users.
ImageAnnotation::labels() — Method in class ImageAnnotation: The labels, this annotation got assigned by the users.
Label — Class in namespace Biigle: Annotations on an image can have multiple labels. A label is e.g. the type of the object visible in the region of the annotation. So if you put a circle annotation around a rock, you would label the annotation with rock.
LabelSource — Class in namespace Biigle: The source (database) of a label.
LabelTree — Class in namespace Biigle: A label tree is a group of labels. Projects can choose to used different label trees, which are then offered for labeling things in the project.
LabelTree::labels() — Method in class LabelTree: The labels that belong to this tree.
LabelTreeVersion — Class in namespace Biigle
LabelTreeVersion::labelTree() — Method in class LabelTreeVersion: The "master" label tree of this version.
LogManager — Class in namespace Biigle\Logging
LargoJobController — Class in namespace Biigle\Modules\Largo\Http\Controllers\Api
LargoController — Class in namespace Biigle\Modules\Largo\Http\Controllers\Api\Projects
LargoController — Class in namespace Biigle\Modules\Largo\Http\Controllers\Api\Volumes
LargoController — Class in namespace Biigle\Modules\Largo\Http\Controllers\Views\Projects
LargoController — Class in namespace Biigle\Modules\Largo\Http\Controllers\Views\Volumes
LargoServiceProvider — Class in namespace Biigle\Modules\Largo
LaserpointsController — Class in namespace Biigle\Modules\Laserpoints\Http\Controllers\Api
$ Job#labelId — Property in class Job: ID of the laser point label.
LaserpointsServiceProvider — Class in namespace Biigle\Modules\Laserpoints
LaserpointsScript — Class in namespace Biigle\Modules\Laserpoints\Support
$ ReportGenerator#labels — Property in class ReportGenerator: Cache for labels of all label trees that are used for this report.
$ IfdoReportGenerator#labels — Property in class IfdoReportGenerator: Labels that have been used in this volume.
$ PythonScriptRunner#lines — Property in class PythonScriptRunner: Array of output lines of the exec call.
LabelTreeExportController — Class in namespace Biigle\Modules\Sync\Http\Controllers\Api\Export
LabelTreeExport — Class in namespace Biigle\Modules\Sync\Support\Export
LabelTreeImport — Class in namespace Biigle\Modules\Sync\Support\Import
$ VolumeImport#labelTreeImport — Property in class VolumeImport: The label tree import instance that belongs to this import.
LabelPolicy — Class in namespace Biigle\Policies
LabelTreePolicy — Class in namespace Biigle\Policies
LabelTreeVersionPolicy — Class in namespace Biigle\Policies
Project::labelTrees() — Method in class Project: The label trees, this project is using.
$ EventServiceProvider#listen — Property in class EventServiceProvider: The event listener mappings for the application.
LessThan — Class in namespace Biigle\Rules
User::labelTrees() — Method in class User: The label trees, this user is a member of.
Video::labels() — Method in class Video: The labels, this video got attached by the users.
VideoAnnotation::labels() — Method in class VideoAnnotation: The labels that are attached to this annotation.
VolumeFile::labels() — Method in class VolumeFile: The labels, this volume file got attached by the users.
VolumeFileLabel::label() — Method in class VolumeFileLabel: The label, this video label belongs to.

M

MigrateTiledImages — Class in namespace Biigle\Console\Commands
Modules — Class in namespace Biigle\Facades
FederatedSearchInstance::models() — Method in class FederatedSearchInstance: The models that belong to this instance.
ElementsAdapter::mimeType() — Method in class ElementsAdapter: {@inheritdoc}
ElementsAdapter::move() — Method in class ElementsAdapter: {@inheritdoc}
LinkVideoAnnotationController::mergeAnnotationLabels() — Method in class LinkVideoAnnotationController: Update annotation labels of the second annotation to point to the first annotation unless there already are equivalent annotation labels there.
MediaTypeController — Class in namespace Biigle\Http\Controllers\Api
MetadataController — Class in namespace Biigle\Http\Controllers\Api\Volumes
MetadataController::mergeVideoMetadata() — Method in class MetadataController: Merge existing video metadata with new metaddata based on timestamps.
ManualController — Class in namespace Biigle\Http\Controllers\Views
$ Kernel#middleware — Property in class Kernel: The application's global HTTP middleware stack.
$ Kernel#middlewareGroups — Property in class Kernel: The application's route middleware groups.
AttachProjectUser::messages() — Method in class AttachProjectUser: Get the error messages for the defined validation rules.
$ DestroyLabelTreeUser#member — Property in class DestroyLabelTreeUser: The label tree member to update.
StoreLabelTreeUser::messages() — Method in class StoreLabelTreeUser: Get the error messages for the defined validation rules.
$ StoreParseIfdo#metadata — Property in class StoreParseIfdo: The parsed metadata.
$ UpdateLabelTreeUser#member — Property in class UpdateLabelTreeUser: The label tree member to update.
UpdateLabelTreeUser::messages() — Method in class UpdateLabelTreeUser: Get the error messages for the defined validation rules.
UpdateProjectUser::messages() — Method in class UpdateProjectUser: Get the error messages for the defined validation rules.
$ UpdateSystemMessage#message — Property in class UpdateSystemMessage: The system message to update.
$ CreateNewImagesOrVideos#metadata — Property in class CreateNewImagesOrVideos: Metadata of the files to add during creation.
MigrateTiledImage — Class in namespace Biigle\Jobs
ProcessNewImage::makeThumbnail() — Method in class ProcessNewImage: Makes a thumbnail for a single image.
TrackObject::maybeDeleteFile() — Method in class TrackObject: Delete a file if it exists.
LabelTree::memberCanLooseAdminStatus() — Method in class LabelTree: Check if a member can loose their admin status.
LabelTree::members() — Method in class LabelTree: The members of this label tree. Every member has a tree-specific role.
LabelTree::memberCanBeRemoved() — Method in class LabelTree: Determines if a member can be removed.
MediaType — Class in namespace Biigle: Volumes can contain either images or videos as media type.
$ AnnotationAssistanceRequestFactory#model — Property in class AnnotationAssistanceRequestFactory: The name of the factory's corresponding model.
StoreColorSortSequence::messages() — Method in class StoreColorSortSequence: Get the error messages for the defined validation rules.
MigratePatchStorage — Class in namespace Biigle\Modules\Largo\Console\Commands
GenerateAnnotationPatch::makeRectContained() — Method in class GenerateAnnotationPatch: Adjust the position and size of the patch rectangle so it is contained in the image.
$ ReportFactory#model — Property in class ReportFactory: The name of the factory's corresponding model.
$ ReportTypeFactory#model — Property in class ReportTypeFactory: The name of the factory's corresponding model.
File::makeTmp() — Method in class File: Creates a new temporary file.
MakesZipArchives — Class in namespace Biigle\Modules\Reports\Support\Reports
MakesZipArchives::makeZip() — Method in class MakesZipArchives: Create a ZIP archive as a report.
IfdoReportGenerator::mergeImageSetItem() — Method in class IfdoReportGenerator: Merge an image-set-items item of the original iFDO with the item generated by this report.
LabelTreeImport::mergeLabels() — Method in class LabelTreeImport: Merge conflicts between import labels and existing labels.
$ InAppNotification#message — Property in class InAppNotification: Message (body) of the notification.
GreaterThan::message() — Method in class GreaterThan: Get the validation error message.
Handle::message() — Method in class Handle: Get the validation error message.
$ ImageMetadata#message — Property in class ImageMetadata: The validation error message.
ImageMetadata::message() — Method in class ImageMetadata: Get the validation error message.
LessThan::message() — Method in class LessThan: Get the validation error message.
Uuid4::message() — Method in class Uuid4: Get the validation error message.
VideoMetadata::message() — Method in class VideoMetadata: Get the validation error message.
VolumeFileUnique::message() — Method in class VolumeFileUnique: Get the validation error message.
$ VolumeFiles#message — Property in class VolumeFiles: The validation message to display.
VolumeFiles::message() — Method in class VolumeFiles: Get the validation error message.
$ VolumeUrl#message — Property in class VolumeUrl: The validation message to display.
VolumeUrl::message() — Method in class VolumeUrl: Get the validation error message.
Modules — Class in namespace Biigle\Services: The module registry service.
Volume::mediaType() — Method in class Volume: The media type of this volume.

N

$ Apidoc#name — Property in class Apidoc: The console command name.
NewUser — Class in namespace Biigle\Console\Commands
$ NewUser#name — Property in class NewUser: The console command name.
NotificationController — Class in namespace Biigle\Http\Controllers\Api
UsersController::newUser() — Method in class UsersController: Shows the admin new user page.
NotificationsController — Class in namespace Biigle\Http\Controllers\Views\Notifications
SettingsController::notifications() — Method in class SettingsController: Shows the notification settings.
AnnotationAssistanceRequest::newFactory() — Method in class AnnotationAssistanceRequest: Create a new factory instance for the model.
$ Publish#name — Property in class Publish: The console command name.
$ Publish#name — Property in class Publish: The console command name.
$ Publish#name — Property in class Publish: The console command name.
$ Config#name — Property in class Config: The console command name.
$ Publish#name — Property in class Publish: The console command name.
$ Config#name — Property in class Config: The console command name.
$ Publish#name — Property in class Publish: The console command name.
$ Publish#name — Property in class Publish: The console command name.
Report::newFactory() — Method in class Report: Create a new factory instance for the model.
ReportType::newFactory() — Method in class ReportType: Create a new factory instance for the model.
$ AbundanceReportGenerator#name — Property in class AbundanceReportGenerator: Name of the report for use in text.
$ AnnotationLocationReportGenerator#name — Property in class AnnotationLocationReportGenerator: Name of the report for use in text.
$ AreaReportGenerator#name — Property in class AreaReportGenerator: Name of the report for use in text.
$ BasicReportGenerator#name — Property in class BasicReportGenerator: Name of the report for use in text.
$ CsvReportGenerator#name — Property in class CsvReportGenerator: Name of the report for use in text.
$ ExtendedReportGenerator#name — Property in class ExtendedReportGenerator: Name of the report for use in text.
$ FullReportGenerator#name — Property in class FullReportGenerator: Name of the report for use in text.
$ ImageLocationReportGenerator#name — Property in class ImageLocationReportGenerator: Name of the report for use in text.
$ ImageIfdoReportGenerator#name — Property in class ImageIfdoReportGenerator: Name of the report for use in text.
$ BasicReportGenerator#name — Property in class BasicReportGenerator: Name of the report for use in text.
$ CsvReportGenerator#name — Property in class CsvReportGenerator: Name of the report for use in text.
$ ImageLocationReportGenerator#name — Property in class ImageLocationReportGenerator: Name of the report for use in text.
$ CsvReportGenerator#name — Property in class CsvReportGenerator: Name of the report for use in text.
$ VideoIfdoReportGenerator#name — Property in class VideoIfdoReportGenerator: Name of the report for use in text.
$ CsvReportGenerator#name — Property in class CsvReportGenerator: Name of the report for use in text.
$ ReportGenerator#name — Property in class ReportGenerator: Name of the report for use in text.
$ AbundanceReportGenerator#name — Property in class AbundanceReportGenerator: Name of the report for use in text.
$ AnnotationLocationReportGenerator#name — Property in class AnnotationLocationReportGenerator: Name of the report for use in text.
$ AreaReportGenerator#name — Property in class AreaReportGenerator: Name of the report for use in text.
$ BasicReportGenerator#name — Property in class BasicReportGenerator: Name of the report for use in text.
$ CsvReportGenerator#name — Property in class CsvReportGenerator: Name of the report for use in text.
$ ExtendedReportGenerator#name — Property in class ExtendedReportGenerator: Name of the report for use in text.
$ FullReportGenerator#name — Property in class FullReportGenerator: Name of the report for use in text.
$ ImageLocationReportGenerator#name — Property in class ImageLocationReportGenerator: Name of the report for use in text.
$ ImageIfdoReportGenerator#name — Property in class ImageIfdoReportGenerator: Name of the report for use in text.
$ BasicReportGenerator#name — Property in class BasicReportGenerator: Name of the report for use in text.
$ CsvReportGenerator#name — Property in class CsvReportGenerator: Name of the report for use in text.
$ ImageLocationReportGenerator#name — Property in class ImageLocationReportGenerator: Name of the report for use in text.
$ CsvReportGenerator#name — Property in class CsvReportGenerator: Name of the report for use in text.
$ VideoIfdoReportGenerator#name — Property in class VideoIfdoReportGenerator: Name of the report for use in text.
$ CsvReportGenerator#name — Property in class CsvReportGenerator: Name of the report for use in text.
$ Prune#name — Property in class Prune: The console command name.
$ Publish#name — Property in class Publish: The console command name.
NewSystemMessageNotification — Class in namespace Biigle\Notifications
$ RouteServiceProvider#namespace — Property in class RouteServiceProvider: The controller namespace for the application.

O

ApiToken::owner() — Method in class ApiToken: The user, this token belongs to.
$ ProcessNewVolumeFiles#only — Property in class ProcessNewVolumeFiles: Array of image/video IDs to restrict processing to.
$ DelphiGather#outputPath — Property in class DelphiGather: Path to the temporary ouput file of the Delphi gather script.
$ ReportGenerator#options — Property in class ReportGenerator: Options for this report.
Volume::orderedImages() — Method in class Volume: The images belonging to this volume ordered by filename (ascending).
Volume::orderedFiles() — Method in class Volume: The images belonging to this volume ordered by filename (ascending).

P

PruneNotifications — Class in namespace Biigle\Console\Commands
UpdateVideoMetadata::processVolume() — Method in class UpdateVideoMetadata
UpdateVideoMetadata::processLocalVideo() — Method in class UpdateVideoMetadata
UpdateVideoMetadata::processRemoteVideo() — Method in class UpdateVideoMetadata
Handler::prepareException() — Method in class Handler: Prepare exception for rendering.
PruneFileCache — Class in namespace Biigle\FileCache\Console\Commands
FileCache::prune() — Method in class FileCache: Remove cached files that are too old or exceed the maximum cache size.
FileCache::prune() — Method in class FileCache: Remove cached files that are too old or exceed the maximum cache size.
FileCacheServiceProvider::provides() — Method in class FileCacheServiceProvider: Get the services provided by the provider.
FileCacheFake::prune() — Method in class FileCacheFake: Remove cached files that are too old or exceed the maximum cache size.
ElementsAdapter::parseStorageAttributes() — Method in class ElementsAdapter
ElementsAdapter::processFileRoots() — Method in class ElementsAdapter
ProjectController — Class in namespace Biigle\Http\Controllers\Api
ProjectLabelTreeController — Class in namespace Biigle\Http\Controllers\Api
ProjectUserController — Class in namespace Biigle\Http\Controllers\Api
ProjectVolumeController — Class in namespace Biigle\Http\Controllers\Api
ProjectsAttachableVolumesController — Class in namespace Biigle\Http\Controllers\Api
ParseIfdoController — Class in namespace Biigle\Http\Controllers\Api\Volumes
PrivacyController — Class in namespace Biigle\Http\Controllers\Views
ProjectLabelTreeController — Class in namespace Biigle\Http\Controllers\Views\Projects
ProjectUserController — Class in namespace Biigle\Http\Controllers\Views\Projects
ProjectsController — Class in namespace Biigle\Http\Controllers\Views\Projects
SettingsController::profile() — Method in class SettingsController: Shows the profile settings.
PreventRequestsDuringMaintenance — Class in namespace Biigle\Http\Middleware
$ TrustProxies#proxies — Property in class TrustProxies: The trusted proxies for this application.
$ AttachProjectUser#project — Property in class AttachProjectUser: The project to attach a user to.
$ DestroyPinnedProject#project — Property in class DestroyPinnedProject: The project to unpin.
$ DestroyProjectUser#project — Property in class DestroyProjectUser: The project to detach the user from.
$ StoreLabelTree#project — Property in class StoreLabelTree: The project to which the new label tree should be attached (if any).
$ StorePinnedProject#project — Property in class StorePinnedProject: The project to pin.
$ StoreProjectLabelTree#project — Property in class StoreProjectLabelTree: The project to attach the label tree to.
StoreUser::prepareForValidation() — Method in class StoreUser: Prepare the data for validation.
$ StoreVolume#project — Property in class StoreVolume: The project to attach the new volume to.
StoreVolume::prepareForValidation() — Method in class StoreVolume: Prepare the data for validation.
StoreVolumeFile::prepareForValidation() — Method in class StoreVolumeFile: Prepare the data for validation.
StoreVolumeMetadata::prepareForValidation() — Method in class StoreVolumeMetadata: Prepare the data for validation.
$ UpdateProject#project — Property in class UpdateProject: The project to update.
$ UpdateProjectUser#project — Property in class UpdateProjectUser: The project to update the user in.
UpdateUser::prepareForValidation() — Method in class UpdateUser: Prepare the data for validation.
UpdateVolume::prepareForValidation() — Method in class UpdateVolume: Prepare the data for validation.
CreateNewImagesOrVideos::processVideoColumns() — Method in class CreateNewImagesOrVideos: Generate the metadata map entry for a single video file.
ProcessNewImage — Class in namespace Biigle\Jobs
ProcessNewVideo — Class in namespace Biigle\Jobs
ProcessNewVolumeFiles — Class in namespace Biigle\Jobs
TrackObject::python() — Method in class TrackObject: Execute a Python script.
Label::parent() — Method in class Label: The parent label if the labels are ordered in a tree-like structure.
LabelTree::projects() — Method in class LabelTree: The projects that are using this label tree.
AnanasServiceProvider::provides() — Method in class AnanasServiceProvider: Get the services provided by the provider.
Publish — Class in namespace Biigle\Modules\Ananas\Console\Commands
StoreAnnotationAssistanceRequest::prepareForValidation() — Method in class StoreAnnotationAssistanceRequest: Prepare the data for validation.
ColorSortServiceProvider::provides() — Method in class ColorSortServiceProvider: Get the services provided by the provider.
Publish — Class in namespace Biigle\Modules\ColorSort\Console\Commands
Publish — Class in namespace Biigle\Modules\Geo\Console\Commands
GeoServiceProvider::provides() — Method in class GeoServiceProvider: Get the services provided by the provider.
ProjectImageAnnotationLabelController — Class in namespace Biigle\Modules\Geo\Http\Controllers\Api
ProjectController — Class in namespace Biigle\Modules\Geo\Http\Controllers\Views
Publish — Class in namespace Biigle\Modules\Largo\Console\Commands
$ StoreProjectLargoSession#project — Property in class StoreProjectLargoSession: The project to store the Largo session for.
LargoServiceProvider::provides() — Method in class LargoServiceProvider: Get the services provided by the provider.
Publish — Class in namespace Biigle\Modules\Laserpoints\Console\Commands
ProcessDelphiJob — Class in namespace Biigle\Modules\Laserpoints\Jobs
ProcessImageDelphiJob — Class in namespace Biigle\Modules\Laserpoints\Jobs
ProcessImageManualJob — Class in namespace Biigle\Modules\Laserpoints\Jobs
ProcessManualJob — Class in namespace Biigle\Modules\Laserpoints\Jobs
$ ProcessManualJob#points — Property in class ProcessManualJob: Laser point coordinates for the image.
ProcessVolumeDelphiJob — Class in namespace Biigle\Modules\Laserpoints\Jobs
LaserpointsServiceProvider::provides() — Method in class LaserpointsServiceProvider: Get the services provided by the provider.
DelphiGather::python() — Method in class DelphiGather: Execute a python script.
Publish — Class in namespace Biigle\Modules\Reports\Console\Commands
ProjectReportController — Class in namespace Biigle\Modules\Reports\Http\Controllers\Api\Projects
ProjectReportsController — Class in namespace Biigle\Modules\Reports\Http\Controllers\Views
$ StoreProjectReport#project — Property in class StoreProjectReport: The project to generate a new report for.
ProjectObserver — Class in namespace Biigle\Modules\Reports\Observers
$ ReportsServiceProvider#policies — Property in class ReportsServiceProvider: The policy mappings for the application.
ReportsServiceProvider::provides() — Method in class ReportsServiceProvider: Get the services provided by the provider.
CsvFile::put() — Method in class CsvFile: Append a new row to the CSV file.
$ File#path — Property in class File: File path.
File::put() — Method in class File: Add content to the file.
ProjectImageReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Projects
ProjectReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Projects
ProjectVideoReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Projects
IfdoReportGenerator::processFile() — Method in class IfdoReportGenerator: Create the image-set-item entry for an image or video.
AreaReportGenerator::parseRows() — Method in class AreaReportGenerator: Creates the array of annotations that is inserted into the CSV file.
ImageIfdoReportGenerator::processFile() — Method in class ImageIfdoReportGenerator: Create the image-set-item entry for an image.
PythonScriptRunner — Class in namespace Biigle\Modules\Reports\Support\Reports\Volumes
VideoIfdoReportGenerator::processFile() — Method in class VideoIfdoReportGenerator: Create the image-set-item entry for a video.
$ VolumeReportGenerator#pythonScriptRunner — Property in class VolumeReportGenerator: Object that runs the Python script to generate a report.
Prune — Class in namespace Biigle\Modules\Sync\Console\Commands
Publish — Class in namespace Biigle\Modules\Sync\Console\Commands
PublicLabelTreeExportController — Class in namespace Biigle\Modules\Sync\Http\Controllers\Api\Export
PublicLabelTreeImportController — Class in namespace Biigle\Modules\Sync\Http\Controllers\Api\Import
PublicLabelTreeImportController — Class in namespace Biigle\Modules\Sync\Http\Controllers\Views
PostprocessVolumeImport — Class in namespace Biigle\Modules\Sync\Jobs
PublicLabelExport — Class in namespace Biigle\Modules\Sync\Support\Export
PublicLabelTreeExport — Class in namespace Biigle\Modules\Sync\Support\Export
ArchiveManager::prune() — Method in class ArchiveManager: Delete uploaded import files that are older than one week.
$ Import#path — Property in class Import: Path to the directory with the import files.
LabelTreeImport::perform() — Method in class LabelTreeImport: Perform the import.
PublicLabelTreeImport — Class in namespace Biigle\Modules\Sync\Support\Import
PublicLabelTreeImport::perform() — Method in class PublicLabelTreeImport: Perform the import.
UserImport::perform() — Method in class UserImport: Perform the import.
VolumeImport::perform() — Method in class VolumeImport: Perform the import.
SyncServiceProvider::provides() — Method in class SyncServiceProvider: Get the services provided by the provider.
ProjectObserver — Class in namespace Biigle\Observers
ProjectPolicy — Class in namespace Biigle\Policies
Project — Class in namespace Biigle
$ AuthServiceProvider#policies — Property in class AuthServiceProvider: The policy mappings for the application.
GreaterThan::passes() — Method in class GreaterThan: Determine if the validation rule passes.
Handle::passes() — Method in class Handle: Determine if the validation rule passes.
ImageMetadata::passes() — Method in class ImageMetadata: Determine if the validation rule passes.
LessThan::passes() — Method in class LessThan: Determine if the validation rule passes.
Uuid4::passes() — Method in class Uuid4: Determine if the validation rule passes.
VideoMetadata::passes() — Method in class VideoMetadata: Determine if the validation rule passes.
VolumeFileUnique::passes() — Method in class VolumeFileUnique: Check if the given filenames don't already exist in the volume.
VolumeFiles::passes() — Method in class VolumeFiles: Check if an array of image filenames is valid.
VolumeUrl::passes() — Method in class VolumeUrl: Determine if the validation rule passes.
VolumeUrl::passesRemoteUrl() — Method in class VolumeUrl: Validate a remote volume URL.
VolumeUrl::passesDiskUrl() — Method in class VolumeUrl: Validate a storage disk volume URL.
WormsAdapter::parseItem() — Method in class WormsAdapter: Parse a WoRMS item to the internal representation.
SystemMessage::publish() — Method in class SystemMessage: Publishes this system message if it wasn't alerady published.
ParsesMetadata — Class in namespace Biigle\Traits
ParsesMetadata::parseMetadata() — Method in class ParsesMetadata: Parse a metadata CSV string to an array.
ParsesMetadata::parseMetadataFile() — Method in class ParsesMetadata: Parse metadata from a CSV file to an array.
ParsesMetadata::parseIfdo() — Method in class ParsesMetadata: Parse a volume metadata iFDO YAML string to an array.
ParsesMetadata::parseIfdoFile() — Method in class ParsesMetadata: Parse a volume metadata iFDO YAML file to an array.
ParsesMetadata::parseIfdoItems() — Method in class ParsesMetadata: Parse iFDO image-set-items to a CSV-like metadata array that can be parsed by parseMetadata if converted to a string.
User::projects() — Method in class User: The projects, this user is a member of.
Volume::parseFilesQueryString() — Method in class Volume: Parses a comma separated list of filenames to an array.
Volume::projects() — Method in class Volume: The project(s), this volume belongs to.

Q

$ ApplyLargoSession#queue — Property in class ApplyLargoSession: The queue to push this job to.
IfdoReportGenerator::query() — Method in class IfdoReportGenerator: Assemble a new DB query for the volume of this report.
AbundanceReportGenerator::query() — Method in class AbundanceReportGenerator: Assemble a new DB query for the volume of this report.
AnnotationLocationReportGenerator::query() — Method in class AnnotationLocationReportGenerator: Assemble a new DB query for the volume of this report.
AreaReportGenerator::query() — Method in class AreaReportGenerator: Assemble a new DB query for the volume of this report.
BasicReportGenerator::query() — Method in class BasicReportGenerator: Assemble a new DB query for the volume of this report.
CsvReportGenerator::query() — Method in class CsvReportGenerator: Assemble a new DB query for the volume of this report.
ExtendedReportGenerator::query() — Method in class ExtendedReportGenerator: Assemble a new DB query for the volume of this report.
FullReportGenerator::query() — Method in class FullReportGenerator: Assemble a new DB query for the volume of this report.
ImageLocationReportGenerator::query() — Method in class ImageLocationReportGenerator: Assemble a new DB query for the volume of this report.
ImageIfdoReportGenerator::query() — Method in class ImageIfdoReportGenerator: Assemble a new DB query for the volume of this report.
BasicReportGenerator::query() — Method in class BasicReportGenerator: Assemble a new DB query for the volume of this report.
CsvReportGenerator::query() — Method in class CsvReportGenerator: Assemble a new DB query for the volume of this report.
ImageLocationReportGenerator::query() — Method in class ImageLocationReportGenerator: Assemble a new DB query for the volume of this report.
CsvReportGenerator::query() — Method in class CsvReportGenerator: Assemble a new DB query for the video of this report.
VideoIfdoReportGenerator::query() — Method in class VideoIfdoReportGenerator: Assemble a new DB query for the volume of this report.
CsvReportGenerator::query() — Method in class CsvReportGenerator: Assemble a new DB query for the volume of this report.

R

Handler::register() — Method in class Handler: Register the exception handling callbacks for the application.
FileCache::retrieve() — Method in class FileCache: Cache a remote or cloud storage file if it is not cached and get the path to the cached file. If the file is local, nothing will be done and the path to the local file will be returned.
FileCache::retrieveExistingFile() — Method in class FileCache: Get path and handle for a file that exists in the cache.
FileCache::retrieveNewFile() — Method in class FileCache: Get path and handle for a file that does not yet exist in the cache.
FileCacheServiceProvider::register() — Method in class FileCacheServiceProvider: Register the service provider.
FileCacheServiceProvider::registerScheduledPruneCommand() — Method in class FileCacheServiceProvider: Register the scheduled command to prune the file cache.
ElementsServiceProvider::register() — Method in class ElementsServiceProvider: Register the service provider.
ElementsAdapter::read() — Method in class ElementsAdapter: {@inheritdoc}
ElementsAdapter::readStream() — Method in class ElementsAdapter: {@inheritdoc}
RoleController — Class in namespace Biigle\Http\Controllers\Api
UserRegistrationController::reject() — Method in class UserRegistrationController: Reject a user sign up.
BrowserController::removePrefix() — Method in class BrowserController: Removes a prefix from all strings in an array.
$ LoginController#redirectTo — Property in class LoginController: Where to redirect users after login / registration.
RegisterController — Class in namespace Biigle\Http\Controllers\Auth
$ RegisterController#redirectTo — Property in class RegisterController: Where to redirect users after login / registration.
RegisterController::register() — Method in class RegisterController: Handle a registration request for the application.
RegisterController::registered() — Method in class RegisterController: The user has been registered.
ResetPasswordController — Class in namespace Biigle\Http\Controllers\Auth
ResetPasswordController::rules() — Method in class ResetPasswordController: Get the password reset validation rules.
UsersController::roleClassMap() — Method in class UsersController: Determines the Boostrap label class for a role label.
$ Kernel#routeMiddleware — Property in class Kernel: The application's route middleware.
Authenticate::redirectTo() — Method in class Authenticate: Get the path the user should be redirected to when they are not authenticated.
RedirectIfAuthenticated — Class in namespace Biigle\Http\Middleware
AttachProjectUser::rules() — Method in class AttachProjectUser: Get the validation rules that apply to the request.
DestroyAnnotationSession::rules() — Method in class DestroyAnnotationSession: Get the validation rules that apply to the request.
DestroyLabel::rules() — Method in class DestroyLabel: Get the validation rules that apply to the request.
DestroyLabelTree::rules() — Method in class DestroyLabelTree: Get the validation rules that apply to the request.
DestroyLabelTreeUser::rules() — Method in class DestroyLabelTreeUser: Get the validation rules that apply to the request.
DestroyLabelTreeVersion::rules() — Method in class DestroyLabelTreeVersion: Get the validation rules that apply to the request.
DestroyPinnedProject::rules() — Method in class DestroyPinnedProject: Get the validation rules that apply to the request.
DestroyProjectUser::rules() — Method in class DestroyProjectUser: Get the validation rules that apply to the request.
DestroyUser::rules() — Method in class DestroyUser: Get the validation rules that apply to the request.
DestroyVideoAnnotationLabel::rules() — Method in class DestroyVideoAnnotationLabel: Get the validation rules that apply to the request.
DestroyVolumeFile::rules() — Method in class DestroyVolumeFile: Get the validation rules that apply to the request.
LinkVideoAnnotation::rules() — Method in class LinkVideoAnnotation: Get the validation rules that apply to the request.
SplitVideoAnnotation::rules() — Method in class SplitVideoAnnotation: Get the validation rules that apply to the request.
StoreAnnotationSession::rules() — Method in class StoreAnnotationSession: Get the validation rules that apply to the request.
StoreFederatedSearchInstance::rules() — Method in class StoreFederatedSearchInstance: Get the validation rules that apply to the request.
StoreImageAnnotation::rules() — Method in class StoreImageAnnotation: Get the validation rules that apply to the request.
StoreImageAnnotationLabel::rules() — Method in class StoreImageAnnotationLabel: Get the validation rules that apply to the request.
StoreImageAnnotations::rules() — Method in class StoreImageAnnotations: Get the validation rules that apply to the request.
StoreLabel::rules() — Method in class StoreLabel: Get the validation rules that apply to the request.
StoreLabelTree::rules() — Method in class StoreLabelTree: Get the validation rules that apply to the request.
StoreLabelTreeAuthorizedProject::rules() — Method in class StoreLabelTreeAuthorizedProject: Get the validation rules that apply to the request.
$ StoreLabelTreeMerge#remove — Property in class StoreLabelTreeMerge: Array of label IDs to remove.
StoreLabelTreeMerge::rules() — Method in class StoreLabelTreeMerge: Get the validation rules that apply to the request.
StoreLabelTreeUser::rules() — Method in class StoreLabelTreeUser: Get the validation rules that apply to the request.
StoreLabelTreeVersion::rules() — Method in class StoreLabelTreeVersion: Get the validation rules that apply to the request.
StoreParseIfdo::rules() — Method in class StoreParseIfdo: Get the validation rules that apply to the request.
StorePinnedProject::rules() — Method in class StorePinnedProject: Get the validation rules that apply to the request.
StoreProject::rules() — Method in class StoreProject: Get the validation rules that apply to the request.
StoreProjectLabelTree::rules() — Method in class StoreProjectLabelTree: Get the validation rules that apply to the request.
StoreSystemMessage::rules() — Method in class StoreSystemMessage: Get the validation rules that apply to the request.
StoreUser::rules() — Method in class StoreUser: Get the validation rules that apply to the request.
StoreVideoAnnotation::rules() — Method in class StoreVideoAnnotation: Get the validation rules that apply to the request.
StoreVideoAnnotationLabel::rules() — Method in class StoreVideoAnnotationLabel: Get the validation rules that apply to the request.
StoreVolume::rules() — Method in class StoreVolume: Get the validation rules that apply to the request.
StoreVolumeFile::rules() — Method in class StoreVolumeFile: Get the validation rules that apply to the request.
StoreVolumeFileLabel::rules() — Method in class StoreVolumeFileLabel: Get the validation rules that apply to the request.
StoreVolumeMetadata::rules() — Method in class StoreVolumeMetadata: Get the validation rules that apply to the request.
UpdateAnnotationSession::rules() — Method in class UpdateAnnotationSession: Get the validation rules that apply to the request.
UpdateFederatedSearchInstance::rules() — Method in class UpdateFederatedSearchInstance: Get the validation rules that apply to the request.
UpdateLabel::rules() — Method in class UpdateLabel: Get the validation rules that apply to the request.
UpdateLabelTree::rules() — Method in class UpdateLabelTree: Get the validation rules that apply to the request.
UpdateLabelTreeUser::rules() — Method in class UpdateLabelTreeUser: Get the validation rules that apply to the request.
UpdateLabelTreeVersion::rules() — Method in class UpdateLabelTreeVersion: Get the validation rules that apply to the request.
UpdateProject::rules() — Method in class UpdateProject: Get the validation rules that apply to the request.
UpdateProjectUser::rules() — Method in class UpdateProjectUser: Get the validation rules that apply to the request.
UpdateSystemMessage::rules() — Method in class UpdateSystemMessage: Get the validation rules that apply to the request.
UpdateUser::rules() — Method in class UpdateUser: Get the validation rules that apply to the request.
UpdateUserSettings::rules() — Method in class UpdateUserSettings: Get the validation rules that apply to the request.
UpdateVideoAnnotation::rules() — Method in class UpdateVideoAnnotation: Get the validation rules that apply to the request.
UpdateVolume::rules() — Method in class UpdateVolume: Get the validation rules that apply to the request.
LabelTree::replicateLabelsOf() — Method in class LabelTree: Replicate all labels of one label tree to this one.
AnanasServiceProvider::register() — Method in class AnanasServiceProvider: Register the service provider.
AnnotationAssistanceRequest::receiver() — Method in class AnnotationAssistanceRequest: The (optional) user that should receive the assistance request.
AnnotationAssistanceRequestController::respond() — Method in class AnnotationAssistanceRequestController: Respond to an assistance request.
StoreAnnotationAssistanceRequest::rules() — Method in class StoreAnnotationAssistanceRequest: Get the validation rules that apply to the request.
StoreAnnotationAssistanceRequest::rateLimitApplies() — Method in class StoreAnnotationAssistanceRequest: Check if the rate limit of creating new requests applies.
UpdateAnnotationAssistanceRequest::rules() — Method in class UpdateAnnotationAssistanceRequest: Get the validation rules that apply to the request.
$ AnnotationAssistanceRequest#request — Property in class AnnotationAssistanceRequest: The annotation assistance request.
ColorSortServiceProvider::register() — Method in class ColorSortServiceProvider: Register the service provider.
StoreColorSortSequence::rules() — Method in class StoreColorSortSequence: Get the validation rules that apply to the request.
GeoServiceProvider::register() — Method in class GeoServiceProvider: Register the service provider.
StoreLargoSession::rules() — Method in class StoreLargoSession: Get the validation rules that apply to the request.
RemoveAnnotationPatches — Class in namespace Biigle\Modules\Largo\Jobs
RemoveImageAnnotationPatches — Class in namespace Biigle\Modules\Largo\Jobs
RemoveVideoAnnotationPatches — Class in namespace Biigle\Modules\Largo\Jobs
LargoServiceProvider::register() — Method in class LargoServiceProvider: Register the service provider.
ComputeImage::rules() — Method in class ComputeImage: Get the validation rules that apply to the request.
ComputeVolume::rules() — Method in class ComputeVolume: Get the validation rules that apply to the request.
Image::readyForManualDetection() — Method in class Image: Determines if this image has a valid number of manually annotated laser points.
LaserpointsServiceProvider::register() — Method in class LaserpointsServiceProvider: Register the service provider.
Volume::readyForDelphiDetection() — Method in class Volume: Determines if the images of this volume can be processed with Delphi.
ReportFactory — Class in namespace Biigle\Modules\Reports\Database\Factories
ReportTypeFactory — Class in namespace Biigle\Modules\Reports\Database\Factories
ReportsController — Class in namespace Biigle\Modules\Reports\Http\Controllers\Api
ReportsController — Class in namespace Biigle\Modules\Reports\Http\Controllers\Views
StoreProjectReport::rules() — Method in class StoreProjectReport: Get the validation rules that apply to the request.
StoreReport::rules() — Method in class StoreReport: Get the validation rules that apply to the request.
StoreVolumeReport::rules() — Method in class StoreVolumeReport: Get the validation rules that apply to the request.
$ GenerateReportJob#report — Property in class GenerateReportJob: The report that should be generated.
ReportReady — Class in namespace Biigle\Modules\Reports\Notifications
$ ReportReady#report — Property in class ReportReady: The report that is ready.
ReportObserver — Class in namespace Biigle\Modules\Reports\Observers
ReportPolicy — Class in namespace Biigle\Modules\Reports\Policies
Report — Class in namespace Biigle\Modules\Reports
$ Report#reportGenerator — Property in class Report: The report generator for this report.
ReportType — Class in namespace Biigle\Modules\Reports
ReportsServiceProvider — Class in namespace Biigle\Modules\Reports
ReportsServiceProvider::register() — Method in class ReportsServiceProvider: Register the service provider.
$ AbundanceReportGenerator#reportClass — Property in class AbundanceReportGenerator: The class of the volume report to use for this project report.
$ AnnotationLocationReportGenerator#reportClass — Property in class AnnotationLocationReportGenerator: The class of the volume report to use for this project report.
$ AreaReportGenerator#reportClass — Property in class AreaReportGenerator: The class of the volume report to use for this project report.
$ BasicReportGenerator#reportClass — Property in class BasicReportGenerator: The class of the volume report to use for this project report.
$ CsvReportGenerator#reportClass — Property in class CsvReportGenerator: The class of the volume report to use for this project report.
$ ExtendedReportGenerator#reportClass — Property in class ExtendedReportGenerator: The class of the volume report to use for this project report.
$ FullReportGenerator#reportClass — Property in class FullReportGenerator: The class of the volume report to use for this project report.
$ ImageLocationReportGenerator#reportClass — Property in class ImageLocationReportGenerator: The class of the volume report to use for this project report.
$ ImageIfdoReportGenerator#reportClass — Property in class ImageIfdoReportGenerator: The class of the volume report to use for this project report.
$ BasicReportGenerator#reportClass — Property in class BasicReportGenerator: The class of the volume report to use for this project report.
$ CsvReportGenerator#reportClass — Property in class CsvReportGenerator: The class of the volume report to use for this project report.
$ ImageLocationReportGenerator#reportClass — Property in class ImageLocationReportGenerator: The class of the volume report to use for this project report.
$ ProjectReportGenerator#reportClass — Property in class ProjectReportGenerator: The class of the report generator to use for this project report.
$ CsvReportGenerator#reportClass — Property in class CsvReportGenerator: The class of the video report to use for this project report.
$ VideoIfdoReportGenerator#reportClass — Property in class VideoIfdoReportGenerator: The class of the volume report to use for this project report.
$ CsvReportGenerator#reportClass — Property in class CsvReportGenerator: The class of the volume report to use for this project report.
ReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports
AnnotationReportGenerator::restrictToAnnotationSessionQuery() — Method in class AnnotationReportGenerator: Callback to be used in a when query statement that restricts the resulting annotation labels to the annotation session of this report.
PythonScriptRunner::run() — Method in class PythonScriptRunner: Execute the external report parsing Python script.
CsvReportGenerator::restrictToAnnotationSessionQuery() — Method in class CsvReportGenerator: Callback to be used in a when query statement that restricts the resulting annotation labels to the annotation session of this report.
VolumeReportGenerator::restrictToLabelsQuery() — Method in class VolumeReportGenerator: Callback to be used in a when query statement that restricts the results to a specific subset of annotation labels.
RestrictsToExportArea — Class in namespace Biigle\Modules\Reports\Traits
RestrictsToExportArea::restrictToExportAreaQuery() — Method in class RestrictsToExportArea: Callback to be used in a when query statement that restricts the resulting annotations to the export area of the reansect of this report (if there is any).
RestrictsToNewestLabels — Class in namespace Biigle\Modules\Reports\Traits
RestrictsToNewestLabels::restrictToNewestLabelQuery() — Method in class RestrictsToNewestLabels: Callback to be used in a when query statement that restricts the results to the newest annotation labels of each annotation.
ShowPublicLabelTreeExport::rules() — Method in class ShowPublicLabelTreeExport: Get the validation rules that apply to the request.
SyncServiceProvider::register() — Method in class SyncServiceProvider: Register the service provider.
RegistrationAccepted — Class in namespace Biigle\Notifications
RegistrationConfirmation — Class in namespace Biigle\Notifications
RegistrationRejected — Class in namespace Biigle\Notifications
CachedPolicy::remember() — Method in class CachedPolicy: Wrapper for the Cache::remember function of the array cache.
LabelTreePolicy::removeMember() — Method in class LabelTreePolicy: Determine if the user can remove the given member from the given label tree.
ProjectPolicy::removeMember() — Method in class ProjectPolicy: Determine if user can remove the given project member from the given project.
Project::removeUserId() — Method in class Project: Removes the user by ID from this project.
Project::removeVolume() — Method in class Project: Detaches the volume from this project. Fails if this is the last project, the volume is attached to, unless force is true.
Project::removeAllVolumes() — Method in class Project: Detaches all volumes from this project. Fails if this is the last project, one of the volumes is attached to, unless force is true.
AppServiceProvider::register() — Method in class AppServiceProvider: Register any application services.
RouteServiceProvider — Class in namespace Biigle\Providers
Role — Class in namespace Biigle: A role of a user. Users have one global role and can have many project- specific roles.
Modules::register() — Method in class Modules: Register module assets in one step.
Modules::registerViewMixin() — Method in class Modules: Registers a new view mixin of a module for a view.
Modules::registerControllerMixin() — Method in class Modules: Registers a new controller mixin of a module.
User::role() — Method in class User: The global role of this user.
VideoAnnotation::rectangleToInterpolationPoints() — Method in class VideoAnnotation: Convert the points array of a rectangle (frame) to points that can be interpolated.

S

Annotation::scopeVisibleFor() — Method in class Annotation: Scope a query to only include annotations that are visible for a certain user.
Annotation::scopeWithLabel() — Method in class Annotation: Scope a query to only include annotations that have a certain label attached.
Annotation::scopeAllowedBySession() — Method in class Annotation: Scope a query to only include annotations allowed by the session for the user.
Annotation::shape() — Method in class Annotation: The shape of this annotation.
AnnotationSession::setStartsAtAttribute() — Method in class AnnotationSession: Set the start date.
AnnotationSession::setEndsAtAttribute() — Method in class AnnotationSession: Set the end date.
$ MigrateTiledImages#signature — Property in class MigrateTiledImages: The name and signature of the console command.
$ PruneNotifications#signature — Property in class PruneNotifications: The name and signature of the console command.
$ UpdateImageMetadata#signature — Property in class UpdateImageMetadata: The name and signature of the console command.
UpdateImageMetadata::stripTileProperties() — Method in class UpdateImageMetadata: Removes the tileProperties attribute from images.
$ UpdateVideoMetadata#signature — Property in class UpdateVideoMetadata: The name and signature of the console command.
$ UpdateVolumeUrls#signature — Property in class UpdateVolumeUrls: The name and signature of the console command.
Kernel::schedule() — Method in class Kernel: Define the application's command schedule.
FederatedSearchInstance::scopeWithLocalToken() — Method in class FederatedSearchInstance: Scope a query to all instances that are have a local token.
FederatedSearchInstance::scopeWithRemoteToken() — Method in class FederatedSearchInstance: Scope a query to all instances that are have a remote token.
FederatedSearchInstance::setRemoteTokenAttribute() — Method in class FederatedSearchInstance: Set the remote_token attribute.
FederatedSearchModel::scopeLabelTrees() — Method in class FederatedSearchModel: Scope a query to all models that represent label trees.
FederatedSearchModel::scopeProjects() — Method in class FederatedSearchModel: Scope a query to all models that represent projects.
FederatedSearchModel::scopeVolumes() — Method in class FederatedSearchModel: Scope a query to all models that represent volumes.
FederatedSearchModel::setThumbnailUrlAttribute() — Method in class FederatedSearchModel: Set the model thumbnail url attribute.
FederatedSearchModel::setThumbnailUrlsAttribute() — Method in class FederatedSearchModel: Set the model thumbnail urls attribute.
$ PruneFileCache#signature — Property in class PruneFileCache: The name and signature of the console command.
$ FileCache#storage — Property in class FileCache: File FilesystemManager instance to use
ElementsAdapter::setVisibility() — Method in class ElementsAdapter: {@inheritdoc}
ApiTokenController::store() — Method in class ApiTokenController: Creates a new API token.
FederatedSearchInstanceController::store() — Method in class FederatedSearchInstanceController: Connect a remote federated search instance.
ImageAnnotationBulkController::store() — Method in class ImageAnnotationBulkController: Create new annotations
ImageAnnotationController::show() — Method in class ImageAnnotationController: Displays the annotation.
ImageAnnotationController::store() — Method in class ImageAnnotationController: Creates a new annotation in the specified image.
ImageAnnotationLabelController::store() — Method in class ImageAnnotationLabelController: Creates a new label for the specified annotation.
ImageController::show() — Method in class ImageController: Shows the specified image.
ImageController::showFile() — Method in class ImageController: Shows the specified image file.
ImageLabelController::store() — Method in class ImageLabelController: Creates a new label for the specified image.
LabelTreeAuthorizedProjectController::store() — Method in class LabelTreeAuthorizedProjectController: Authorize a project to use a private label tree.
LabelTreeController::show() — Method in class LabelTreeController: Shows a label tree.
LabelTreeController::store() — Method in class LabelTreeController: Creates a new label tree.
LabelTreeLabelController::store() — Method in class LabelTreeLabelController: Add labels to a label tree.
LabelTreeMergeController::store() — Method in class LabelTreeMergeController: Add or remove many labels of a tree.
LabelTreeUserController::store() — Method in class LabelTreeUserController: Add a member to a label tree.
LabelTreeVersionController::store() — Method in class LabelTreeVersionController: Creates a new label tree version.
LinkVideoAnnotationController::store() — Method in class LinkVideoAnnotationController: Link two video annotations
MediaTypeController::show() — Method in class MediaTypeController: Displays the specified media type.
ProjectController::show() — Method in class ProjectController: Displays the specified project.
ProjectController::store() — Method in class ProjectController: Creates a new project.
ProjectLabelTreeController::store() — Method in class ProjectLabelTreeController: Adds a label tree to the specified project.
ProjectVolumeController::store() — Method in class ProjectVolumeController: Creates a new volume associated to the specified project.
RoleController::show() — Method in class RoleController: Displays the specified role.
ShapeController — Class in namespace Biigle\Http\Controllers\Api
ShapeController::show() — Method in class ShapeController: Displays the specified shape.
SplitVideoAnnotationController — Class in namespace Biigle\Http\Controllers\Api
SplitVideoAnnotationController::store() — Method in class SplitVideoAnnotationController: Split the video annotation
SystemMessageController — Class in namespace Biigle\Http\Controllers\Api
SystemMessageController::store() — Method in class SystemMessageController: Creates a new system message.
UserController::show() — Method in class UserController: Shows the specified user.
UserController::showOwn() — Method in class UserController: Shows the requesting user.
UserController::store() — Method in class UserController: Creates a new user.
UserPinnedProjectController::store() — Method in class UserPinnedProjectController: Pin a project.
VideoAnnotationController::show() — Method in class VideoAnnotationController: Shows a video annotation.
VideoAnnotationController::store() — Method in class VideoAnnotationController: Creates a new annotation in the specified video.
VideoAnnotationLabelController::store() — Method in class VideoAnnotationLabelController: Attach a label to a video annotation
VideoController::show() — Method in class VideoController: Shows the specified image.
VideoFileController::show() — Method in class VideoFileController: Get a video file.
VideoLabelController::store() — Method in class VideoLabelController: Creates a new label for the specified video.
VisibilityController::show() — Method in class VisibilityController: Displays the specified visibility.
VolumeAnnotationSessionController::store() — Method in class VolumeAnnotationSessionController: Creates a new annotation session for the specified volume.
VolumeController::show() — Method in class VolumeController: Displays the specified volume.
VolumeFileController::store() — Method in class VolumeFileController: Add images/videos to the specified volume.
IfdoController::show() — Method in class IfdoController: Get an iFDO file attached to a volume
MetadataController::store() — Method in class MetadataController: Add or update file metadata for a volume.
ParseIfdoController::store() — Method in class ParseIfdoController: parse an iFDO file
ForgotPasswordController::sendResetLinkEmail() — Method in class ForgotPasswordController: Send a reset link to the given user.
RegisterController::showRegistrationForm() — Method in class RegisterController: Show the application registration form.
LogsController::show() — Method in class LogsController: Shows a specific logfile.
SystemMessagesController — Class in namespace Biigle\Http\Controllers\Views\Admin
UsersController::show() — Method in class UsersController: Shows the user information page.
UsersController::showProject() — Method in class UsersController: Add project statistics to the view.
UsersController::showVolume() — Method in class UsersController: Add volume statistics to the view.
UsersController::showAnnotations() — Method in class UsersController: Add annotation statistics to the view.
UsersController::showVideos() — Method in class UsersController: Add project statistics to the view.
AnnotationToolController::show() — Method in class AnnotationToolController: Shows the annotation tool.
ImageAnnotationController::show() — Method in class ImageAnnotationController: Redirect to the annotator link that shows a specified annotation.
HeartbeatController::store() — Method in class HeartbeatController: Do nothing but to keep the CSRF token valid.
ImprintController::show() — Method in class ImprintController: Show the the imprint view.
LabelTreeMembersController::show() — Method in class LabelTreeMembersController: Shows the label tree members.
LabelTreeMergeController::show() — Method in class LabelTreeMergeController: Show the label tree merge page.
LabelTreeProjectsController::show() — Method in class LabelTreeProjectsController: Shows the label tree projects page.
LabelTreeProjectsController::showMasterLabelTree() — Method in class LabelTreeProjectsController: Show the label tree projects page of a master label tree.
LabelTreeProjectsController::showVersionedLabelTree() — Method in class LabelTreeProjectsController: Show the label tree page projects of a versioned label tree.
LabelTreeVersionsController::show() — Method in class LabelTreeVersionsController: Show the label tree version page.
LabelTreesController::show() — Method in class LabelTreesController: Show the label tree page.
LabelTreesController::showMasterLabelTree() — Method in class LabelTreesController: Show the label tree page of a master label tree.
LabelTreesController::showVersionedLabelTree() — Method in class LabelTreesController: Show the label tree page of a versioned label tree.
PrivacyController::show() — Method in class PrivacyController: Show the the privacy view.
ProjectLabelTreeController::show() — Method in class ProjectLabelTreeController: Shows the project show page.
ProjectUserController::show() — Method in class ProjectUserController: Shows the project show page.
ProjectsController::show() — Method in class ProjectsController: Shows the project show page v2.
SearchController — Class in namespace Biigle\Http\Controllers\Views
SearchController::searchLabelTrees() — Method in class SearchController: Add label tree results to the search view.
SearchController::searchProjects() — Method in class SearchController: Add project results to the search view.
SearchController::searchVolumes() — Method in class SearchController: Add volume results to the search view.
SearchController::searchAnnotations() — Method in class SearchController: Add image results to the search view.
SearchController::searchVideos() — Method in class SearchController: Add video results to the search view.
SettingsController — Class in namespace Biigle\Http\Controllers\Views
SystemMessagesController — Class in namespace Biigle\Http\Controllers\Views\SystemMessages
SystemMessagesController::show() — Method in class SystemMessagesController: Show a system message.
TermsController::show() — Method in class TermsController: Show the the terms view.
VideoAnnotationController::show() — Method in class VideoAnnotationController: Redirect to the annotator link that shows a specified annotation.
VideoController::show() — Method in class VideoController: Show the video annotation tool.
SessionOnly — Class in namespace Biigle\Http\Middleware: Middleware to allow session cookie authentication for the route only.
$ DestroyAnnotationSession#session — Property in class DestroyAnnotationSession: The annotation session that should be deleted.
$ LinkVideoAnnotation#secondAnnotation — Property in class LinkVideoAnnotation: The second annotation that should be linked.
SplitVideoAnnotation — Class in namespace Biigle\Http\Requests
StoreAnnotationSession — Class in namespace Biigle\Http\Requests
StoreFederatedSearchInstance — Class in namespace Biigle\Http\Requests
StoreImageAnnotation — Class in namespace Biigle\Http\Requests
StoreImageAnnotationLabel — Class in namespace Biigle\Http\Requests
StoreImageAnnotations — Class in namespace Biigle\Http\Requests
StoreImageLabel — Class in namespace Biigle\Http\Requests
StoreLabel — Class in namespace Biigle\Http\Requests
StoreLabelTree — Class in namespace Biigle\Http\Requests
StoreLabelTreeAuthorizedProject — Class in namespace Biigle\Http\Requests
StoreLabelTreeMerge — Class in namespace Biigle\Http\Requests
StoreLabelTreeUser — Class in namespace Biigle\Http\Requests
StoreLabelTreeVersion — Class in namespace Biigle\Http\Requests
StoreParseIfdo — Class in namespace Biigle\Http\Requests
StorePinnedProject — Class in namespace Biigle\Http\Requests
StoreProject — Class in namespace Biigle\Http\Requests
StoreProjectLabelTree — Class in namespace Biigle\Http\Requests
StoreSystemMessage — Class in namespace Biigle\Http\Requests
StoreUser — Class in namespace Biigle\Http\Requests
StoreVideoAnnotation — Class in namespace Biigle\Http\Requests
StoreVideoAnnotation::shouldTrack() — Method in class StoreVideoAnnotation: Determine if the new annotation should be tracked.
StoreVideoAnnotationLabel — Class in namespace Biigle\Http\Requests
StoreVideoLabel — Class in namespace Biigle\Http\Requests
StoreVolume — Class in namespace Biigle\Http\Requests
StoreVolumeFile — Class in namespace Biigle\Http\Requests
StoreVolumeFileLabel — Class in namespace Biigle\Http\Requests
StoreVolumeMetadata — Class in namespace Biigle\Http\Requests
$ UpdateAnnotationSession#session — Property in class UpdateAnnotationSession: The annotation session that should be updated.
Image::setTilingInProgressAttribute() — Method in class Image: Set the tilingInProgress attribute.
ProcessNewImage::shouldBeTiled() — Method in class ProcessNewImage: Determine if an image should be tiled.
ProcessNewImage::submitTileJob() — Method in class ProcessNewImage: Submit a new tile job if the image needs tiling.
Label::scopeUsed() — Method in class Label: Scope a query to used labels.
Label::setColorAttribute() — Method in class Label: Remove the optional '#' from a hexadecimal color.
LabelTree::scopePublicTrees() — Method in class LabelTree: Scope a query to public label trees.
LabelTree::scopePrivateTrees() — Method in class LabelTree: Scope a query to private label trees.
LabelTree::scopeAccessibleBy() — Method in class LabelTree: Scope a query to all trees that are accessible by a user.
LabelTree::scopeWithoutVersions() — Method in class LabelTree: Scope a query to all trees that are not a varsion of another tree.
LabelTree::scopeGlobal() — Method in class LabelTree: Scope a query to all "global" trees.
LabelTreeVersion::setDoiAttribute() — Method in class LabelTreeVersion: Set the doi attribute of this version.
AnnotationAssistanceRequestController::store() — Method in class AnnotationAssistanceRequestController: Create a new annotation assistance request.
ImageController::show() — Method in class ImageController: Shows the image file that belongs to the assistance request.
AnnotationAssistanceRequestController::show() — Method in class AnnotationAssistanceRequestController: Show an assistance request.
StoreAnnotationAssistanceRequest — Class in namespace Biigle\Modules\Ananas\Http\Requests
VolumeColorSortSequenceController::show() — Method in class VolumeColorSortSequenceController: Show the sequence of images sorted by a specific color.
VolumeColorSortSequenceController::store() — Method in class VolumeColorSortSequenceController: Request a new color sort sequence.
StoreColorSortSequence — Class in namespace Biigle\Modules\ColorSort\Http\Requests
$ ComputeNewSequence#sequence — Property in class ComputeNewSequence: The color sort sequence that should be computed.
Sequence — Class in namespace Biigle\Modules\ColorSort: This model represents a sequence of volume images sorted by a specific color.
Sort — Class in namespace Biigle\Modules\ColorSort\Support: Wrapper for the color sort script.
ProjectController::show() — Method in class ProjectController: Shows the project geo page.
VolumeController::show() — Method in class VolumeController: Shows the volume geo page.
$ GenerateMissing#signature — Property in class GenerateMissing: The name and signature of the console command.
$ MigratePatchStorage#signature — Property in class MigratePatchStorage: The name and signature of the console command.
LargoJobController::show() — Method in class LargoJobController: Check if a job to save a Largo session is still running
LargoController::save() — Method in class LargoController: Save changes of an Largo session for a project.
LargoController::save() — Method in class LargoController: Save changes of an Largo session for a volume.
AnnotationCatalogController::show() — Method in class AnnotationCatalogController: Show the annotation catalog of a label tree.
StoreLargoSession — Class in namespace Biigle\Modules\Largo\Http\Requests
StoreProjectLargoSession — Class in namespace Biigle\Modules\Largo\Http\Requests
StoreVolumeLargoSession — Class in namespace Biigle\Modules\Largo\Http\Requests
GenerateAnnotationPatch::shouldRetryAfterException() — Method in class GenerateAnnotationPatch: Determine if this job should retry instead of fail after an exception
RemoveAnnotationPatches::submitChunkedJobs() — Method in class RemoveAnnotationPatches: Submit more instances of this job that should process smaller chunks.
AnnotationObserver::saved() — Method in class AnnotationObserver: Handle the event of creating/saving a single annotation.
ImagesController::showLaserpoints() — Method in class ImagesController: Show laserpoint data for this image.
Image::setLaserpointsAttribute() — Method in class Image: Set or update the dynamic attribute for the laser points information.
ProjectReportController::store() — Method in class ProjectReportController: Generate a project report.
ReportsController::show() — Method in class ReportsController: Shows the specified report file.
ExportAreaController::show() — Method in class ExportAreaController: Show the export area of the volume.
ExportAreaController::store() — Method in class ExportAreaController: Set the export area.
VolumeReportController::store() — Method in class VolumeReportController: Generate a volume report.
SearchControllerMixin — Class in namespace Biigle\Modules\Reports\Http\Controllers\Mixins\Views
ProjectReportsController::show() — Method in class ProjectReportsController: Show the new project reports view.
VolumeReportsController::show() — Method in class VolumeReportsController: Show the volumes reports view.
StoreProjectReport — Class in namespace Biigle\Modules\Reports\Http\Requests
StoreReport — Class in namespace Biigle\Modules\Reports\Http\Requests
StoreVolumeReport — Class in namespace Biigle\Modules\Reports\Http\Requests
Report::source() — Method in class Report: Source of the report (\Biigle\Volume, \Biigle\Project or \Biigle\Video).
Report::setReportGenerator() — Method in class Report: Set the report generator for this model.
MakesZipArchives::sanitizeFilename() — Method in class MakesZipArchives: Sanitizes a filename.
$ ReportGenerator#source — Property in class ReportGenerator: Source this report belongs to (e.g. a volume).
ReportGenerator::setSource() — Method in class ReportGenerator: Set the source.
ReportGenerator::shouldSeparateLabelTrees() — Method in class ReportGenerator: Should this report separate the output files for different label trees?
ReportGenerator::shouldSeparateUsers() — Method in class ReportGenerator: Should this report separate the output files for different user?
IfdoReportGenerator::shouldConvertWormsId() — Method in class IfdoReportGenerator: Determine if the label ID should be converted to a WoRMS URN.
AnnotationReportGenerator::shouldAggregateChildLabels() — Method in class AnnotationReportGenerator: Determines if this report should aggregate child labels.
AreaReportGenerator::setSize() — Method in class AreaReportGenerator: Calculate the pixel/sqm size and dimensions for an annotation.
VolumeReportGenerator::setPythonScriptRunner() — Method in class VolumeReportGenerator: Set the Python script runner object.
Volume::setExportAreaAttribute() — Method in class Volume: Set or update the dynamic attribute for the export area.
$ Uuids#signature — Property in class Uuids: The name and signature of the console command.
Controller::show() — Method in class Controller: Handle a generic export request.
PublicLabelTreeExportController::show() — Method in class PublicLabelTreeExportController: Handle a public label tree export request.
ImportController::store() — Method in class ImportController: Initiate a new import.
PublicLabelTreeImportController::store() — Method in class PublicLabelTreeImportController: Perform a public label tree import.
ImportAdminController::show() — Method in class ImportAdminController: Shows the import admin page for a specific import which wasn't completed yet.
ImportAdminController::showUserImport() — Method in class ImportAdminController: Show the view for an unfinished user import.
ImportAdminController::showLabelTreeImport() — Method in class ImportAdminController: Show the view for an unfinished label tree import.
ImportAdminController::showVolumeImport() — Method in class ImportAdminController: Show the view for an unfinished volume tree import.
ShowPublicLabelTreeExport — Class in namespace Biigle\Modules\Sync\Http\Requests
ArchiveManager::store() — Method in class ArchiveManager: Stores an uploaded archive file and returns its token.
SyncServiceProvider — Class in namespace Biigle\Modules\Sync
SystemMessagePolicy — Class in namespace Biigle\Policies
Project::scopeInCommon() — Method in class Project: Scope a query to all projects that the user and the volume with the given ID have in common.
Project::scopeAccessibleBy() — Method in class Project: Scope a query to all projects that are accessible by a user.
EventServiceProvider::shouldDiscoverEvents() — Method in class EventServiceProvider: Determine if events and listeners should be automatically discovered.
$ VolumeFiles#sampleCount — Property in class VolumeFiles: Number of sample images to check for existence.
VolumeFiles::sampleFilesExist() — Method in class VolumeFiles: Check a random sample of the files for existence.
WormsAdapter::setSoapClient() — Method in class WormsAdapter: Set the SOAP client instance to use for requests.
Shape — Class in namespace Biigle: A shape, e.g. point or circle.
SystemMessage — Class in namespace Biigle: System messages are broadcasts from the application administrators that reach all users of the instance. Whenevr a new system message is published, each user will get a notification to read it.
SystemMessage::scopePublished() — Method in class SystemMessage: All published system messages.
SystemMessageType — Class in namespace Biigle
HasJsonAttributes::setJsonAttr() — Method in class HasJsonAttributes: Set a dynamic JSON attribute.
HasPointsAttribute::setPointsAttribute() — Method in class HasPointsAttribute: Round the floats of the points array to 2 decimals before saving.
User::setEmailAttribute() — Method in class User: Set the email attribute and transform it to lowercase.
User::setSettings() — Method in class User: Set settings and merge them with the existing settings.
User::setIsInSuperUserModeAttribute() — Method in class User: Enables or disables Super User Mode if the user is a global admin.
Video::setErrorAttribute() — Method in class Video: Set the error attribute.
Video::setTakenAtAttribute() — Method in class Video: Set the taken_at timestamps.
VideoAnnotation::setPointsAttribute() — Method in class VideoAnnotation: Round the floats of the points array to 2 decimals before saving.
Volume::scopeAccessibleBy() — Method in class Volume: Scope a query to all volumes that are accessible by a user.
Volume::setUrlAttribute() — Method in class Volume: Set the url attribute of this volume.
Volume::setCreatingAsyncAttribute() — Method in class Volume: Set the creating_async attribute of this volume.
Volume::saveIfdo() — Method in class Volume: Save an iFDO metadata file and link it with this volume.
VolumeFile::setMetadataAttribute() — Method in class VolumeFile: Set the metadata attribute.
VolumeFile::setWidthAttribute() — Method in class VolumeFile: Set the width attribute.
VolumeFile::setHeightAttribute() — Method in class VolumeFile: Set the height attribute.
VolumeFile::setSizeAttribute() — Method in class VolumeFile: Set the size attribute.
VolumeFile::setMimeTypeAttribute() — Method in class VolumeFile: Set the mimeType attribute.

T

TrustHosts — Class in namespace App\Http\Middleware
TiledImagesDeleted — Class in namespace Biigle\Events
ManualController::tutorialsArticle() — Method in class ManualController: Show a tutorials article.
SettingsController::tokens() — Method in class SettingsController: Shows the tokens settings.
TermsController — Class in namespace Biigle\Http\Controllers\Views
TrimStrings — Class in namespace Biigle\Http\Middleware
TrustProxies — Class in namespace Biigle\Http\Middleware
UpdateUserActivity::terminate() — Method in class UpdateUserActivity: Perform any final actions for the request lifecycle.
VerifyCsrfToken::tokensMatch() — Method in class VerifyCsrfToken: Determine if the request has a URI that should pass through CSRF verification.
$ DestroyLabelTree#tree — Property in class DestroyLabelTree: The label tree to destroy.
$ DestroyLabelTreeUser#tree — Property in class DestroyLabelTreeUser: The label tree to attach a user to.
$ StoreLabel#tree — Property in class StoreLabel: The label tree to which the label should be attached.
$ StoreLabelTreeAuthorizedProject#tree — Property in class StoreLabelTreeAuthorizedProject: The label tree to attach an authorized project to.
$ StoreLabelTreeMerge#tree — Property in class StoreLabelTreeMerge: The label tree to create/remove the labels of.
$ StoreLabelTreeUser#tree — Property in class StoreLabelTreeUser: The label tree to attach a user to.
$ StoreLabelTreeVersion#tree — Property in class StoreLabelTreeVersion: The label tree from which a new version should be created.
$ UpdateLabelTree#tree — Property in class UpdateLabelTree: The label tree to update.
$ UpdateLabelTreeUser#tree — Property in class UpdateLabelTreeUser: The label tree to attach a user to.
$ ProcessNewImage#tries — Property in class ProcessNewImage: The number of times the job may be attempted.
$ ProcessNewImage#threshold — Property in class ProcessNewImage: If the image dimensions exceed this threshold the imag eshould be tiled.
$ ProcessNewVideo#tries — Property in class ProcessNewVideo: The number of times the job may be attempted.
TileSingleImage — Class in namespace Biigle\Jobs
$ TileSingleImage#tempPath — Property in class TileSingleImage: Path to the temporary storage file for the tiles.
TrackObject — Class in namespace Biigle\Jobs: Attempts to track an obect in a video. The object is initially defined by a video annotation. The annotation will be updated with the positions determined with the object tracking method.
$ TrackObject#tries — Property in class TrackObject: The number of times the job may be attempted.
$ Label#timestamps — Property in class Label: Don't maintain timestamps for this model.
Label::tree() — Method in class Label: The label tree this label belongs to.
$ LabelSource#timestamps — Property in class LabelSource: Don't maintain timestamps for this model.
$ LabelTreeVersion#timestamps — Property in class LabelTreeVersion: Don't maintain timestamps for this model.
$ MediaType#timestamps — Property in class MediaType: Don't maintain timestamps for this model.
AnnotationAssistanceRequest::toMail() — Method in class AnnotationAssistanceRequest: Get the mail representation of the notification.
AnnotationAssistanceRequest::toArray() — Method in class AnnotationAssistanceRequest: Get the array representation of the notification.
$ ComputeNewSequence#tries — Property in class ComputeNewSequence: The number of times the job may be attempted.
$ Sequence#table — Property in class Sequence: The table associated with the model.
$ Sequence#timestamps — Property in class Sequence: Don't maintain timestamps for this model.
$ ApplyLargoSession#tries — Property in class ApplyLargoSession: Number of times to retry this job.
$ GenerateAnnotationPatch#targetDisk — Property in class GenerateAnnotationPatch: The storage disk to store the annotation patches to.
$ ProcessDelphiJob#tries — Property in class ProcessDelphiJob: The number of times the job may be attempted.
ReportReady::toMail() — Method in class ReportReady: Get the mail representation of the notification.
ReportReady::toArray() — Method in class ReportReady: Get the array representation of the notification.
Report::type() — Method in class Report: Type of the report.
$ ReportType#timestamps — Property in class ReportType: Don't maintain timestamps for this model.
$ ReportGenerator#tmpFiles — Property in class ReportGenerator: Temporary files that are created when generating a report.
$ ShowPublicLabelTreeExport#tree — Property in class ShowPublicLabelTreeExport: The label tree that should be exported.
$ ImageAnnotationExport#tmpPath — Property in class ImageAnnotationExport: Path to the temporary CSV file.
$ ImageAnnotationLabelExport#tmpPath — Property in class ImageAnnotationLabelExport: Path to the temporary CSV file.
$ ImageExport#tmpPath — Property in class ImageExport: Path to the temporary CSV file.
$ ImageLabelExport#tmpPath — Property in class ImageLabelExport: Path to the temporary CSV file.
$ PublicLabelExport#tmpPath — Property in class PublicLabelExport: Path to the temporary CSV file.
$ VideoAnnotationExport#tmpPath — Property in class VideoAnnotationExport: Path to the temporary CSV file.
$ VideoAnnotationLabelExport#tmpPath — Property in class VideoAnnotationLabelExport: Path to the temporary CSV file.
$ VideoExport#tmpPath — Property in class VideoExport: Path to the temporary CSV file.
$ VideoLabelExport#tmpPath — Property in class VideoLabelExport: Path to the temporary CSV file.
$ ArchiveManager#tmpPath — Property in class ArchiveManager: Base path to the temporary directory to store extracted imports.
PublicLabelTreeImport::treeExists() — Method in class PublicLabelTreeImport: Checks if the label tree of the import already exists.
$ InAppNotification#title — Property in class InAppNotification: Title of the notification.
$ InAppNotification#type — Property in class InAppNotification: Notification type.
InAppNotification::toArray() — Method in class InAppNotification: Get the array representation of the notification.
RegistrationAccepted::toMail() — Method in class RegistrationAccepted: Get the mail representation of the notification.
RegistrationConfirmation::toMail() — Method in class RegistrationConfirmation: Get the mail representation of the notification.
RegistrationRejected::toMail() — Method in class RegistrationRejected: Get the mail representation of the notification.
$ Role#timestamps — Property in class Role: Don't maintain timestamps for this model.
$ VolumeFiles#typeId — Property in class VolumeFiles: The media type ID.
$ Shape#timestamps — Property in class Shape: Don't maintain timestamps for this model.
SystemMessage::type() — Method in class SystemMessage: The type of this system message.
$ SystemMessageType#timestamps — Property in class SystemMessageType: Don't maintain timestamps for this model.
$ Visibility#timestamps — Property in class Visibility: Don't maintain timestamps for this model.
$ VolumeFile#timestamps — Property in class VolumeFile: Don't maintain timestamps for this model.

U

AnnotationLabel::user() — Method in class AnnotationLabel: The user who created this annotation label.
AnnotationSession::users() — Method in class AnnotationSession: The users, this annotation session is restricted to.
UpdateImageMetadata — Class in namespace Biigle\Console\Commands
UpdateVideoMetadata — Class in namespace Biigle\Console\Commands
UpdateVolumeUrls — Class in namespace Biigle\Console\Commands
UpdateVolumeUrls::updateVolumes() — Method in class UpdateVolumeUrls
$ VolumeFilesDeleted#uuids — Property in class VolumeFilesDeleted: UUIDs of deleted images/videos.
FederatedSearchModel::users() — Method in class FederatedSearchModel: The users who can access this model.
$ GenericFile#url — Property in class GenericFile: The file URL.
AnnotationSessionController::update() — Method in class AnnotationSessionController: Updates the annotation session.
FederatedSearchInstanceController::update() — Method in class FederatedSearchInstanceController: update federated search instance.
ImageAnnotationController::update() — Method in class ImageAnnotationController: Updates the annotation including its points.
ImageAnnotationLabelController::update() — Method in class ImageAnnotationLabelController: Updates the attributes of the specified annotation label.
LabelController::update() — Method in class LabelController: Update a label.
LabelTreeController::update() — Method in class LabelTreeController: Updates the attributes of the specified label tree.
LabelTreeUserController::update() — Method in class LabelTreeUserController: Updates a member of a label tree.
LabelTreeVersionController::update() — Method in class LabelTreeVersionController: Update the specified label tree version.
NotificationController::update() — Method in class NotificationController: Mark a notification as read.
ProjectController::update() — Method in class ProjectController: Updates the attributes of the specified project.
ProjectUserController::update() — Method in class ProjectUserController: Updates the attributes of the specified user in the specified project.
SystemMessageController::update() — Method in class SystemMessageController: Updates the attributes of the specified system message.
UserController — Class in namespace Biigle\Http\Controllers\Api
UserController::update() — Method in class UserController: Updates the attributes of the specified user.
UserController::updateOwn() — Method in class UserController: Updates the attributes of the own user.
UserPinnedProjectController — Class in namespace Biigle\Http\Controllers\Api
UserRegistrationController — Class in namespace Biigle\Http\Controllers\Api
UserSettingsController — Class in namespace Biigle\Http\Controllers\Api
UserSettingsController::update() — Method in class UserSettingsController: Update the own user settings
VideoAnnotationController::update() — Method in class VideoAnnotationController: Updates the video annotation
VolumeController::update() — Method in class VolumeController: Updates the attributes of the specified volume.
MetadataController::updateImageMetadata() — Method in class MetadataController: Update volume metadata for each image.
MetadataController::updateVideoMetadata() — Method in class MetadataController: Update volume metadata for each video.
UsedFileLabelsController — Class in namespace Biigle\Http\Controllers\Api\Volumes
UserController — Class in namespace Biigle\Http\Controllers\Api\Volumes
SystemMessagesController::update() — Method in class SystemMessagesController: Shows the admin edit system message page.
UsersController — Class in namespace Biigle\Http\Controllers\Views\Admin
UpdateUserActivity — Class in namespace Biigle\Http\Middleware
$ AttachProjectUser#user — Property in class AttachProjectUser: The user to attach.
$ DestroyProjectUser#user — Property in class DestroyProjectUser: The user to detach.
$ StoreLabelTree#upstreamLabelTree — Property in class StoreLabelTree: The upstream label tree that should be forked (if any)
UpdateAnnotationSession — Class in namespace Biigle\Http\Requests
UpdateFederatedSearchInstance — Class in namespace Biigle\Http\Requests
UpdateLabel — Class in namespace Biigle\Http\Requests
UpdateLabelTree — Class in namespace Biigle\Http\Requests
UpdateLabelTreeUser — Class in namespace Biigle\Http\Requests
UpdateLabelTreeVersion — Class in namespace Biigle\Http\Requests
UpdateOwnUser — Class in namespace Biigle\Http\Requests
UpdateProject — Class in namespace Biigle\Http\Requests
UpdateProjectUser — Class in namespace Biigle\Http\Requests
$ UpdateProjectUser#user — Property in class UpdateProjectUser: The user to update.
UpdateSystemMessage — Class in namespace Biigle\Http\Requests
UpdateUser — Class in namespace Biigle\Http\Requests
$ UpdateUser#updateUser — Property in class UpdateUser: The user to update.
UpdateUserSettings — Class in namespace Biigle\Http\Requests
UpdateVideoAnnotation — Class in namespace Biigle\Http\Requests
UpdateVolume — Class in namespace Biigle\Http\Requests
TileSingleImage::uploadToStorage() — Method in class TileSingleImage: Upload the tiles from temporary local storage to the tiles storage disk.
UpdateFederatedSearchIndex — Class in namespace Biigle\Jobs
UpdateFederatedSearchIndex::updateLabelTreeIndex() — Method in class UpdateFederatedSearchIndex: Update the indexed label trees.
UpdateFederatedSearchIndex::updateProjectIndex() — Method in class UpdateFederatedSearchIndex: Update the indexed projects.
UpdateFederatedSearchIndex::updateVolumeIndex() — Method in class UpdateFederatedSearchIndex: Update the indexed projects.
UpdateFederatedSearchIndex::updateUserAccess() — Method in class UpdateFederatedSearchIndex: Update which user may access which federated search model that was created in this job.
LabelTree::updateMember() — Method in class LabelTree: Update a member (role).
AnnotationAssistanceRequest::user() — Method in class AnnotationAssistanceRequest: The user that created the assistance request.
AnnotationAssistanceRequestController::update() — Method in class AnnotationAssistanceRequestController: Close an annotation assistance request.
UpdateAnnotationAssistanceRequest — Class in namespace Biigle\Modules\Ananas\Http\Requests
$ ApplyLargoSession#user — Property in class ApplyLargoSession: The user who submitted the Largo session.
UserObserver — Class in namespace Biigle\Modules\Reports\Observers
Report::user() — Method in class Report: The user that requested the report.
$ IfdoReportGenerator#users — Property in class IfdoReportGenerator: Users that have been used in this volume.
Uuids — Class in namespace Biigle\Modules\Sync\Console\Commands
UserExportController — Class in namespace Biigle\Modules\Sync\Http\Controllers\Api\Export
ImportController::update() — Method in class ImportController
ImportController::updateUserImport() — Method in class ImportController: Perform a user import.
ImportController::updateLabelTreeImport() — Method in class ImportController: Perform a label tree import.
ImportController::updateVolumeImport() — Method in class ImportController: Perform a volume import.
UserExport — Class in namespace Biigle\Modules\Sync\Support\Export
$ LabelTreeImport#userImport — Property in class LabelTreeImport: The user import instance that belongs to this import.
LabelTreeImport::updateInsertedLabelParentIds() — Method in class LabelTreeImport: Update/set the parent_id of imported labels.
UserImport — Class in namespace Biigle\Modules\Sync\Support\Import
$ VolumeImport#userImport — Property in class VolumeImport: The user import instance that belongs to this import.
$ RegistrationConfirmation#user — Property in class RegistrationConfirmation: User who has been newly registered.
AnnotationLabelPolicy::update() — Method in class AnnotationLabelPolicy: Determine if the user can edit the given annotation label.
AnnotationPolicy::update() — Method in class AnnotationPolicy: Determine if the user may update the given annotation.
FederatedSearchInstancePolicy::update() — Method in class FederatedSearchInstancePolicy: Determine whether the user can update the instance.
LabelPolicy::update() — Method in class LabelPolicy: Determine if the given label can be updated by the user.
LabelTreePolicy::update() — Method in class LabelTreePolicy: Determine if the given label tree can be updated by the user.
LabelTreePolicy::updateMember() — Method in class LabelTreePolicy: Determine if the user can update the given member of the given label tree.
LabelTreeVersionPolicy::update() — Method in class LabelTreeVersionPolicy: Determine if the given label tree version can be updated by the user.
ProjectPolicy::update() — Method in class ProjectPolicy: Determine if the given project can be updated by the user.
SystemMessagePolicy::update() — Method in class SystemMessagePolicy: Determine whether the user can update the systemMessage.
UserPolicy — Class in namespace Biigle\Policies
UserPolicy::update() — Method in class UserPolicy: Determine if the given user can update the user.
VolumePolicy::update() — Method in class VolumePolicy: Determine if the given volume can be updated by the user.
Project::users() — Method in class Project: The members of this project. Every member has a project-specific project_role_id besides their global user role.
Project::userCanBeRemoved() — Method in class Project: Determines if the user can be removed from the project.
Uuid4 — Class in namespace Biigle\Rules
$ VolumeFiles#url — Property in class VolumeFiles: The volume URL to check the image files.
ApiGuard::user() — Method in class ApiGuard: Get the currently authenticated user.
User — Class in namespace Biigle
Volume::users() — Method in class Volume: Return a query for all users associated to this volume through projects.
VolumeFileLabel::user() — Method in class VolumeFileLabel: The user who created this video label.

V

AnnotationSession::volume() — Method in class AnnotationSession: The volume, this annotation session belongs to.
AnnotationSession::videoAnnotations() — Method in class AnnotationSession: Get a query for all video annotations that belong to this session.
VideosDeleted — Class in namespace Biigle\Events
VolumeFilesDeleted — Class in namespace Biigle\Events
VipsImage — Class in namespace Biigle\Facades
$ ElementsAdapter#volumePathsCache — Property in class ElementsAdapter: Caches the Elements volume paths.
ElementsAdapter::visibility() — Method in class ElementsAdapter: {@inheritdoc}
VolumeAnnotationLabelController — Class in namespace Biigle\Http\Controllers\Api\Annotations
VolumeImageAreaController — Class in namespace Biigle\Http\Controllers\Api\Annotations
VideoAnnotationController — Class in namespace Biigle\Http\Controllers\Api
VideoAnnotationLabelController — Class in namespace Biigle\Http\Controllers\Api
VideoController — Class in namespace Biigle\Http\Controllers\Api
VideoFileController — Class in namespace Biigle\Http\Controllers\Api
VideoLabelController — Class in namespace Biigle\Http\Controllers\Api
VisibilityController — Class in namespace Biigle\Http\Controllers\Api
VolumeAnnotationSessionController — Class in namespace Biigle\Http\Controllers\Api
VolumeController — Class in namespace Biigle\Http\Controllers\Api
VolumeFileController — Class in namespace Biigle\Http\Controllers\Api
VolumeFileLabelController — Class in namespace Biigle\Http\Controllers\Api
RegisterController::validator() — Method in class RegisterController: Get a validator for an incoming registration request.
DashboardController::volumesActivityItems() — Method in class DashboardController: Get the most recently created volume a user.
DashboardController::videosActivityItems() — Method in class DashboardController: Get the most recently annotated videos of a user.
VideoAnnotationController — Class in namespace Biigle\Http\Controllers\Views\Videos
VideoController — Class in namespace Biigle\Http\Controllers\Views\Videos
VolumeController — Class in namespace Biigle\Http\Controllers\Views\Volumes
VerifyCsrfToken — Class in namespace Biigle\Http\Middleware
$ DestroyLabelTreeVersion#version — Property in class DestroyLabelTreeVersion: The label tree version that should be deleted.
$ StoreAnnotationSession#volume — Property in class StoreAnnotationSession: The volume to store the annotation session to.
StoreLabelTreeMerge::validateCreate() — Method in class StoreLabelTreeMerge: Validate the create labels.
StoreLabelTreeMerge::validateRemove() — Method in class StoreLabelTreeMerge: Validate the remove labels.
$ StoreVideoAnnotation#video — Property in class StoreVideoAnnotation: The video on which the annotation should be created.
$ StoreVolumeFile#volume — Property in class StoreVolumeFile: The volume to create the images in.
$ StoreVolumeMetadata#volume — Property in class StoreVolumeMetadata: The volume to store the new metadata to.
$ UpdateLabelTreeVersion#version — Property in class UpdateLabelTreeVersion: The label tree version that should be updated.
$ UpdateVolume#volume — Property in class UpdateVolume: The volume to update.
$ CreateNewImagesOrVideos#volume — Property in class CreateNewImagesOrVideos: The volume to create the files for.
$ DeleteVolume#volume — Property in class DeleteVolume: The volume that should be deleted.
$ ProcessNewVideo#video — Property in class ProcessNewVideo: The new video that should be processed.
$ ProcessNewVolumeFiles#volume — Property in class ProcessNewVolumeFiles: The volume for which the files should be processed.
LabelTree::version() — Method in class LabelTree: The version of this label tree (if it is a version of a master label tree).
LabelTree::versions() — Method in class LabelTree: The versions of this (master) label tree.
LabelTree::visibility() — Method in class LabelTree: The visibility of the label tree.
AnnotationAssistanceRequest::via() — Method in class AnnotationAssistanceRequest: Get the notification's delivery channels.
VolumeColorSortSequenceController — Class in namespace Biigle\Modules\ColorSort\Http\Controllers\Api
$ StoreColorSortSequence#volume — Property in class StoreColorSortSequence: The volume for which the new sequence should be computed.
$ Sequence#visible — Property in class Sequence: The attributes included in the model's JSON form. All other are hidden.
Sequence::volume() — Method in class Sequence: The volume, this image belongs to.
VolumeController — Class in namespace Biigle\Modules\Geo\Http\Controllers\Views
VideoAnnotationsController — Class in namespace Biigle\Modules\Largo\Http\Controllers\Api\Labels
StoreLargoSession::videoAnotationsBelongToVolumes() — Method in class StoreLargoSession: Check if all given video annotations belong to the given volumes.
$ StoreProjectLargoSession#volumes — Property in class StoreProjectLargoSession: The volumes that are associated with the image annotations that should be changed.
$ StoreVolumeLargoSession#volume — Property in class StoreVolumeLargoSession: The volume to store the Largo session for.
StoreVolumeLargoSession::validateImageVolume() — Method in class StoreVolumeLargoSession: Validate the request for an image volume.
StoreVolumeLargoSession::validateVideoVolume() — Method in class StoreVolumeLargoSession: Validate the request for an video volume.
VideosCleanupListener — Class in namespace Biigle\Modules\Largo\Listeners
VideoAnnotationObserver — Class in namespace Biigle\Modules\Largo\Observers
VolumeImageController — Class in namespace Biigle\Modules\Laserpoints\Http\Controllers\Api
$ ComputeVolume#volume — Property in class ComputeVolume: The volume that should be processed with laser point detection.
$ ProcessVolumeDelphiJob#volume — Property in class ProcessVolumeDelphiJob: The volume to process the images of.
Volume — Class in namespace Biigle\Modules\Laserpoints: Extends the base Biigle volume.
VolumeReportController — Class in namespace Biigle\Modules\Reports\Http\Controllers\Api\Volumes
VolumeReportsController — Class in namespace Biigle\Modules\Reports\Http\Controllers\Views
StoreProjectReport::validateReportType() — Method in class StoreProjectReport: Validate the report types.
StoreProjectReport::validateGeoInfo() — Method in class StoreProjectReport: Validate the geo info for certain types.
StoreProjectReport::validateImageMetadata() — Method in class StoreProjectReport: Validate image metadata for certain types.
StoreProjectReport::validateIfdos() — Method in class StoreProjectReport: Check if some volumes have iFDO files (if an iFDO report is requested).
$ StoreVolumeReport#volume — Property in class StoreVolumeReport: The volume to generate a new report for.
ReportReady::via() — Method in class ReportReady: Get the notification's delivery channels.
VolumeObserver — Class in namespace Biigle\Modules\Reports\Observers
VideoIfdoReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Projects
VideoIfdoReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Volumes
VolumeReportGenerator — Class in namespace Biigle\Modules\Reports\Support\Reports\Volumes
Volume — Class in namespace Biigle\Modules\Reports: Extends the base Biigle volume.
VolumeExportController — Class in namespace Biigle\Modules\Sync\Http\Controllers\Api\Export
VideoAnnotationExport — Class in namespace Biigle\Modules\Sync\Support\Export
VideoAnnotationLabelExport — Class in namespace Biigle\Modules\Sync\Support\Export
VideoExport — Class in namespace Biigle\Modules\Sync\Support\Export
VideoLabelExport — Class in namespace Biigle\Modules\Sync\Support\Export
VolumeExport — Class in namespace Biigle\Modules\Sync\Support\Export
ArchiveManager::validate() — Method in class ArchiveManager: Validate the uploaded import archive.
Import::validateFiles() — Method in class Import: Check if the files of this import are valid.
Import::validateFile() — Method in class Import: Validate a file of this import.
LabelTreeImport::validateFile() — Method in class LabelTreeImport: Validate a file of this import.
PublicLabelTreeImport::validateFile() — Method in class PublicLabelTreeImport: Validate a file of this import.
UserImport::validateFile() — Method in class UserImport: Validate a file of this import.
VolumeImport — Class in namespace Biigle\Modules\Sync\Support\Import
VolumeImport::validateFile() — Method in class VolumeImport: Validate a file of this import.
InAppNotification::via() — Method in class InAppNotification: Get the notification's delivery channels.
RegistrationAccepted::via() — Method in class RegistrationAccepted: Get the notification's delivery channels.
RegistrationConfirmation::via() — Method in class RegistrationConfirmation: Get the notification's delivery channels.
RegistrationRejected::via() — Method in class RegistrationRejected: Get the notification's delivery channels.
VideoObserver — Class in namespace Biigle\Observers
VolumeObserver — Class in namespace Biigle\Observers
VolumeFileLabelPolicy — Class in namespace Biigle\Policies
VolumeFilePolicy — Class in namespace Biigle\Policies
VolumePolicy — Class in namespace Biigle\Policies
Project::volumes() — Method in class Project: The volumes of this project.
Project::videoVolumes() — Method in class Project: The video volumes of this project.
VideoMetadata — Class in namespace Biigle\Rules
VolumeFileUnique — Class in namespace Biigle\Rules
$ VolumeFileUnique#volume — Property in class VolumeFileUnique: The volume to check for existing files.
VolumeFiles — Class in namespace Biigle\Rules
VolumeUrl — Class in namespace Biigle\Rules
$ Modules#viewMixins — Property in class Modules: The view mixins of every module for every view.
HasPointsAttribute::validatePoints() — Method in class HasPointsAttribute: Validates a points array for the shape of this annotation.
Video — Class in namespace Biigle
VideoAnnotation — Class in namespace Biigle
VideoAnnotation::video() — Method in class VideoAnnotation: The video, this annotation belongs to.
VideoAnnotation::validatePoints() — Method in class VideoAnnotation: Validate the points and frames of this annotation.
VideoAnnotationLabel — Class in namespace Biigle
VideoLabel — Class in namespace Biigle
VideoLabel::video() — Method in class VideoLabel: The video, this video label belongs to.
Visibility — Class in namespace Biigle: The visibility of a model.
Volume — Class in namespace Biigle: A volume is a collection of images. Volumes belong to one or many projects.
Volume::videos() — Method in class Volume: The videos belonging to this volume.
VolumeFile — Class in namespace Biigle
VolumeFile::volume() — Method in class VolumeFile: The volume this video belongs to.
VolumeFileLabel — Class in namespace Biigle: Pivot object for the connection between VolumeFiles and Labels.

W

ElementsAdapter::write() — Method in class ElementsAdapter: {@inheritdoc}
ElementsAdapter::writeStream() — Method in class ElementsAdapter: {@inheritdoc}
AttachProjectUser::withValidator() — Method in class AttachProjectUser: Configure the validator instance.
DestroyProjectUser::withValidator() — Method in class DestroyProjectUser: Configure the validator instance.
DestroyUser::withValidator() — Method in class DestroyUser: Configure the validator instance.
DestroyVideoAnnotationLabel::withValidator() — Method in class DestroyVideoAnnotationLabel: Configure the validator instance.
DestroyVolumeFile::withValidator() — Method in class DestroyVolumeFile: Configure the validator instance.
LinkVideoAnnotation::withValidator() — Method in class LinkVideoAnnotation: Configure the validator instance.
SplitVideoAnnotation::withValidator() — Method in class SplitVideoAnnotation: Configure the validator instance.
StoreImageAnnotation::withValidator() — Method in class StoreImageAnnotation: Configure the validator instance.
StoreImageAnnotations::withValidator() — Method in class StoreImageAnnotations: Configure the validator instance.
StoreLabel::withValidator() — Method in class StoreLabel: Configure the validator instance.
StoreLabelTree::withValidator() — Method in class StoreLabelTree: Configure the validator instance.
StoreLabelTreeMerge::withValidator() — Method in class StoreLabelTreeMerge: Configure the validator instance.
StoreLabelTreeUser::withValidator() — Method in class StoreLabelTreeUser: Configure the validator instance.
StoreParseIfdo::withValidator() — Method in class StoreParseIfdo: Configure the validator instance.
StorePinnedProject::withValidator() — Method in class StorePinnedProject: Configure the validator instance.
StoreProjectLabelTree::withValidator() — Method in class StoreProjectLabelTree: Configure the validator instance.
StoreVideoAnnotation::withValidator() — Method in class StoreVideoAnnotation: Configure the validator instance.
StoreVideoAnnotationLabel::withValidator() — Method in class StoreVideoAnnotationLabel: Configure the validator instance.
StoreVolume::withValidator() — Method in class StoreVolume: Configure the validator instance.
StoreVolumeMetadata::withValidator() — Method in class StoreVolumeMetadata: Configure the validator instance.
UpdateFederatedSearchInstance::withValidator() — Method in class UpdateFederatedSearchInstance: Configure the validator instance.
UpdateLabel::withValidator() — Method in class UpdateLabel: Configure the validator instance.
UpdateLabelTreeUser::withValidator() — Method in class UpdateLabelTreeUser: Configure the validator instance.
UpdateProjectUser::withValidator() — Method in class UpdateProjectUser: Configure the validator instance.
UpdateUserSettings::withValidator() — Method in class UpdateUserSettings: Configure the validator instance.
$ ProcessNewImage#width — Property in class ProcessNewImage: The desired thumbnail width.
StoreAnnotationAssistanceRequest::withValidator() — Method in class StoreAnnotationAssistanceRequest: Configure the validator instance.
UpdateAnnotationAssistanceRequest::withValidator() — Method in class UpdateAnnotationAssistanceRequest: Configure the validator instance.
StoreColorSortSequence::withValidator() — Method in class StoreColorSortSequence: Configure the validator instance.
StoreProjectLargoSession::withValidator() — Method in class StoreProjectLargoSession: Configure the validator instance.
StoreVolumeLargoSession::withValidator() — Method in class StoreVolumeLargoSession: Configure the validator instance.
ComputeImage::withValidator() — Method in class ComputeImage: Configure the validator instance.
ComputeVolume::withValidator() — Method in class ComputeVolume: Configure the validator instance.
StoreProjectReport::withValidator() — Method in class StoreProjectReport: Configure the validator instance.
StoreReport::withValidator() — Method in class StoreReport: Configure the validator instance.
StoreVolumeReport::withValidator() — Method in class StoreVolumeReport: Configure the validator instance.
$ IfdoReportGenerator#wormsLabelSource — Property in class IfdoReportGenerator: Label source model for the WoRMS database.
IfdoReportGenerator::writeYaml() — Method in class IfdoReportGenerator: Write the report YAML file.
WormsAdapter — Class in namespace Biigle\Services\LabelSourceAdapters: WoRMS label source adapter.

_

VolumeFilesDeleted::__construct() — Method in class VolumeFilesDeleted: Create a new event instance.
FileCache::__construct() — Method in class FileCache: Create an instance.
GenericFile::__construct() — Method in class GenericFile: Create a new instance.
FileCacheFake::__construct() — Method in class FileCacheFake
ElementsAdapter::__construct() — Method in class ElementsAdapter: Constructor
ApiTokenController::__construct() — Method in class ApiTokenController: Creates a new ApiTokenController instance.
UserController::__construct() — Method in class UserController: Creates a new UserController instance.
UserRegistrationController::__construct() — Method in class UserRegistrationController: Creates a new instance.
ForgotPasswordController::__construct() — Method in class ForgotPasswordController: Create a new controller instance.
LoginController::__construct() — Method in class LoginController: Create a new controller instance.
RegisterController::__construct() — Method in class RegisterController: Create a new controller instance.
ResetPasswordController::__construct() — Method in class ResetPasswordController: Create a new controller instance.
DashboardController::__construct() — Method in class DashboardController: Create a new instance.
CreateNewImagesOrVideos::__construct() — Method in class CreateNewImagesOrVideos: Create a new job instance.
DeleteVolume::__construct() — Method in class DeleteVolume: Create a new job instance.
MigrateTiledImage::__construct() — Method in class MigrateTiledImage: Create a new job instance.
ProcessNewImage::__construct() — Method in class ProcessNewImage: Create a new job instance.
ProcessNewVideo::__construct() — Method in class ProcessNewVideo: Create a new instance.
ProcessNewVolumeFiles::__construct() — Method in class ProcessNewVolumeFiles: Create a new job instance.
TileSingleImage::__construct() — Method in class TileSingleImage: Create a new job instance.
TrackObject::__construct() — Method in class TrackObject: Create a new instance.
UpdateFederatedSearchIndex::__construct() — Method in class UpdateFederatedSearchIndex: Create a new job instance.
CreateRedisLogger::__invoke() — Method in class CreateRedisLogger: Create a custom Monolog instance.
LogManager::__construct() — Method in class LogManager: Create a new instance.
AnnotationAssistanceRequest::__construct() — Method in class AnnotationAssistanceRequest: Create a new instance.
AnnotationAssistanceResponse::__construct() — Method in class AnnotationAssistanceResponse: Create a new notification instance.
ComputeNewSequence::__construct() — Method in class ComputeNewSequence: Create a new job instance.
GenerateMissing::__construct() — Method in class GenerateMissing: Create a new command instance.
ApplyLargoSession::__construct() — Method in class ApplyLargoSession: Create a new job instance.
GenerateAnnotationPatch::__construct() — Method in class GenerateAnnotationPatch: Create a new job instance.
RemoveAnnotationPatches::__construct() — Method in class RemoveAnnotationPatches: Create a new job instance.
Job::__construct() — Method in class Job: Create a new job instance.
ProcessDelphiJob::__construct() — Method in class ProcessDelphiJob: Create a new job instance.
ProcessImageDelphiJob::__construct() — Method in class ProcessImageDelphiJob: Create a new job instance.
ProcessImageManualJob::__construct() — Method in class ProcessImageManualJob: Create a new job instance.
ProcessManualJob::__construct() — Method in class ProcessManualJob: Create a new job instance.
ProcessVolumeDelphiJob::__construct() — Method in class ProcessVolumeDelphiJob: Create a new job instance.
DelphiGather::__construct() — Method in class DelphiGather
GenerateReportJob::__construct() — Method in class GenerateReportJob: Create a new job instance.
ReportReady::__construct() — Method in class ReportReady: Create a new notification instance.
CsvFile::__construct() — Method in class CsvFile: Create a new CSV file.
File::__construct() — Method in class File: Create a new file.
File::__destruct() — Method in class File
ReportGenerator::__construct() — Method in class ReportGenerator: Create a report generator instance.
PythonScriptRunner::__construct() — Method in class PythonScriptRunner: Create and execute the exec command.
VolumeReportGenerator::__construct() — Method in class VolumeReportGenerator: Create a report generator instance.
PostprocessVolumeImport::__construct() — Method in class PostprocessVolumeImport: Create a new job instance.
Export::__construct() — Method in class Export: Create a new instance.
ArchiveManager::__construct() — Method in class ArchiveManager: Create a new instance.
Import::__construct() — Method in class Import: Create a new instance.
InAppNotification::__construct() — Method in class InAppNotification: Create a new notification instance.
NewSystemMessageNotification::__construct() — Method in class NewSystemMessageNotification: Create a new notification instance.
RegistrationConfirmation::__construct() — Method in class RegistrationConfirmation: Create a new notification instance.
CachedPolicy::__construct() — Method in class CachedPolicy: Create a new CachedPolicy.
GreaterThan::__construct() — Method in class GreaterThan: Create a new instance.
ImageMetadata::__construct() — Method in class ImageMetadata: Create a new instance.
LessThan::__construct() — Method in class LessThan: Create a new instance.
VolumeFileUnique::__construct() — Method in class VolumeFileUnique: Create a new instance.
VolumeFiles::__construct() — Method in class VolumeFiles: Create a new instance.
VolumeUrl::__construct() — Method in class VolumeUrl: Create a new instance.
Modules::__construct() — Method in class Modules: Create a new instance.
HasConstantInstances::__callStatic() — Method in class HasConstantInstances: Get one of the instances of this model that are defined in the INSTANCES constant array.